Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2318 ATGGTTGATGATTTACCCTCTTCACCTTCATCACCAACACAACAACCATTGATTTCTTCAAGTGATGAAGAAAAAAGAGGAAAAAAGAGAGAAAGAGAAACCAACAACAACAATGTTAACAACACTAACACTAAGCATCCAGTTTATAGAGGTGTAAGAATGCGAACATGGGGAAAATGGGTTTCTGAAATCCGAGAACCACGAAAGAAAAACCGAATCTGGCTAGGAACATTCGCAACCGCTGAAATGGCAGCCCGTGCACACGATGCAGCTGCACTTACTATAAAAGGTTCATCTGCAATCCTTAACTTCCCCGAACTTTCAGCTACACTTCCAAGACCAGCTTCCAACTCTCCAAGAGATGTTCAAGCTGCCGCAGTTAAAGCCGCGTCTATGGTTCCTCCTCCTCCTCCTCCTTCTCCGGCACCATCTTCATCATCATCCTCCTCCTCTTCTTCGTCGTTGTCTTCTTCATCAACACCGGAAGATCTTGGTGAGATTGTTGAGTTACCAAGACTAGGAACATGTTTTGAGTCACTTGACCCTGAGTTTGTGTTTTTTGACCCAGTTGATTATTGGTATCATAGCAATAATAATAGCATTTATGATAATGAAGAAGAGAATGGTTATGGTTATGGTGATGGTGGATATTTGAACATGATATCAATGCATGACCCAGAAAACACGCTACTTTCACTGTGGTCTTGA 708 0.4209 MVDDLPSSPSSPTQQPLISSSDEEKRGKKRERETNNNNVNNTNTKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDAAALTIKGSSAILNFPELSATLPRPASNSPRDVQAAAVKAASMVPPPPPPSPAPSSSSSSSSSSSLSSSSTPEDLGEIVELPRLGTCFESLDPEFVFFDPVDYWYHSNNNSIYDNEEENGYGYGDGGYLNMISMHDPENTLLSLWS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2318 235 MobiDBLite consensus disorder prediction 111 163 - -
Mtr6g2318 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 217 - -
Mtr6g2318 235 MobiDBLite consensus disorder prediction 1 20 - -
Mtr6g2318 235 MobiDBLite consensus disorder prediction 21 35 - -
Mtr6g2318 235 MobiDBLite consensus disorder prediction 1 47 - -
Mtr6g2318 235 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Mtr6g2318 235 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Mtr6g2318 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 18 217 - -
Mtr6g2318 235 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Mtr6g2318 235 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Mtr6g2318 235 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Mtr6g2318 235 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Mtr6g2318 235 MobiDBLite consensus disorder prediction 145 163 - -
Mtr6g2318 235 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Mtr6g2318 235 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2318 Mtr-Chr6 41047592 41048888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2318 1 213 AP2-EREBP Transcription Factor Family AT5G11590 51.327 6.13e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g2318 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2318 K09286 - gmx:100804801 210.305