Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2317 ATGGTTGATGGTAATGCCTCACTACTACAATCATTTGCTAGTTCAAGTGAAGAAAAAAAGAGAGGAAAAAAGCAAGATAATGGCAACAAAAACAACAACAAAAAGAGTGATAACCCTAATCACCCACTTTATAGAGGAGTTAGAATGCGAACATGGGGAAAATGGGTATCCGAAATCCGTGAACCACGAAAGAAAAGTCGAATCTGGCTTGGAACATATGCTACGGCTGAAATGGCGGCGCGTGCACACGACGTGGCTGCACTTACCTTAAAAGGCTCATCGGCAATCCTTAACTTCCCTGAACTTTCAGCTTCACTTCCTCAACCAACTTCTAACTCGCCAAGAGATATTCAAGCCGCGGCCGCCAAAGCCGCTTCCATGGTTGCTCCACCTCCTTCTCCGATGCCAACATCTTCTTCTTCTTCAACTCCATATGATCTTGGTGAGATTGTTGAACTACCACAACTTGAAACATATTTTGAGTCACCCGTGCCGAACAACGAGTTTGTGTTTTTGGACCCGGTTGATTATTCTCAGTCATGGTATCATAGCATCTATGGTGATGAAGAAGAGAATGGTTATGGTAGTGGATGCAACTTGAACATGATATCAATGCATGACCCAGAAAATACGTTTCTTAATGTTACTTACCCTTTTTAG 660 0.4273 MVDGNASLLQSFASSSEEKKRGKKQDNGNKNNNKKSDNPNHPLYRGVRMRTWGKWVSEIREPRKKSRIWLGTYATAEMAARAHDVAALTLKGSSAILNFPELSASLPQPTSNSPRDIQAAAAKAASMVAPPPSPMPTSSSSSTPYDLGEIVELPQLETYFESPVPNNEFVFLDPVDYSQSWYHSIYGDEEENGYGSGCNLNMISMHDPENTFLNVTYPF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2317 219 MobiDBLite consensus disorder prediction 16 31 - -
Mtr6g2317 219 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Mtr6g2317 219 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Mtr6g2317 219 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Mtr6g2317 219 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Mtr6g2317 219 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Mtr6g2317 219 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Mtr6g2317 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 192 - -
Mtr6g2317 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 192 - -
Mtr6g2317 219 CDD AP2 42 102 IPR001471 GO:0003700|GO:0006355
Mtr6g2317 219 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Mtr6g2317 219 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2317 Mtr-Chr6 41034675 41035520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2317 24 202 AP2-EREBP Transcription Factor Family AT5G11590 50.000 9.32e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g2317 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2317 K09286 - gmx:100804801 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2317 6 41034675 41035520 Mtr6g2317 6 41034675 41035520 ECH
Mtr8g3688 8 47422564 47423847 Mtr6g2317 6 41034675 41035520 PCT