Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2312 ATGATGAATCAATTTGGTATTACCCTTTTGATTCTCTCTACCTTATTCTTCCATATTAGAGCTCAATCACCAACACAAACTACAAATTCACAAGATGCTGTTTCAAATTTCCAACCAAGTCTTGTTGTTGTCATAGCAATCCTAGGTCTCATGTTTTCCTTAACATTCATTCTTCTTATTTTTGCCAAAGTATGTCACCGTAGACAATTACTTCCTATAAGTGATGATCCAAATAATCAATTAGCAACACTTATGAGATCAAGATCAAGATTTTCAGGAATTGACAAAACAGCTATTGAATCACTTCCTTTTTTCAAATTCTCTTCTCTCAAAGGTTCAAAACAAGGGTTGGAATGTTCAATATGTTTGTCGAAATTCGAAGACATAGAAATTTTAAGATTGTTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAGAAACACTCAAGTTGTCCTATTTGCAGACATAAAGTCAACATTGAAGATCAAACAACCTTTGCTTATTCAAATAGTTTAAGGATGTTGGTAAGTGAAGAATCAAACATAGAGATCTTTGTTGAAAGAGAAGAAGATAATAATCAACATGGTTCATCAAGGTTTAGTATTGGAAGCAGCTTTAGGAAAATTGGAAAAGCTACTACTATATTTAAGGAAGAAGAAAAAGGTATTATTTCAAAGGAAGAAGAATTGCTTATAGAAAAAAGTGATTCTAACAATAAAGCTTATCATAAGCATAATCACAAGATTACTATATCTGATGTTGTGTTTAAGCATAGATGGAGCAATGTTAGTTCTTCTGATCTTATGTTTTTGAATTCAGAAATGATTAATGCTTCATCAAGTAACAGGTTCAATAACATGGAATCAAAATTTCAAGATTATGATGGTGAGAAAAGATCGGTGTCCGAAATCACTGGTGTTTCTAGATTTAAAGATTTTGACATGAAGAAAAGGGTGTTTGAAGATTCTTCTTTTGTCGAAAATAATCTTAAAGAGGAAAGAAGGAGGAAGCTTTGGTTTCCAATTGCAAGAAGAACAGCTGAATGGTTTGTGAATAGAGAAAAAAGATCTCAACAATCTCAGAATAAACAACAATCATTTGTTGATGTATAG 1131 0.3156 MMNQFGITLLILSTLFFHIRAQSPTQTTNSQDAVSNFQPSLVVVIAILGLMFSLTFILLIFAKVCHRRQLLPISDDPNNQLATLMRSRSRFSGIDKTAIESLPFFKFSSLKGSKQGLECSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQTTFAYSNSLRMLVSEESNIEIFVEREEDNNQHGSSRFSIGSSFRKIGKATTIFKEEEKGIISKEEELLIEKSDSNNKAYHKHNHKITISDVVFKHRWSNVSSSDLMFLNSEMINASSSNRFNNMESKFQDYDGEKRSVSEITGVSRFKDFDMKKRVFEDSSFVENNLKEERRRKLWFPIARRTAEWFVNREKRSQQSQNKQQSFVDV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2312 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 295 - -
Mtr6g2312 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 297 370 - -
Mtr6g2312 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 295 - -
Mtr6g2312 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 297 370 - -
Mtr6g2312 376 Pfam Ring finger domain 118 161 IPR001841 -
Mtr6g2312 376 CDD RING-H2_PA-TM-RING 118 161 - -
Mtr6g2312 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 170 IPR013083 -
Mtr6g2312 376 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Mtr6g2312 376 SUPERFAMILY RING/U-box 98 167 - -
Mtr6g2312 376 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2312 Mtr-Chr6 40957844 40959561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2312 18 370 C3H Transcription Factor Family AT2G20030 46.632 3.57e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2312 K10664 - gmx:100806950 423.705