Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2308 ATGGATCGAATCATCGGTGATAAATTCAAGTTAGGACGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACTCATATTGATACCTTCGAGATCGTTGCTGTCAAGATCGAGACTGGTAAAACGAAGCATCCACAATTGCTTTATGAAGCCAAGCTCTATAATATTCTTCAAGGAGGAAGTGGTATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGCCCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAATTCTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTATGTGCATTCTAAAGGGTTCCTCCATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTATATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCCACAACCAATCGCCACATCCCATACAGGGAGAACAAAAACTTAACAGGGACTGCGCGTTATGCAAGCTGCAATACTCATCTTGGGATTGAACAAAGCCGCCGGGATGATTTGGAGTCTCTTGGATATGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCGACAAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTCCATTACTGCCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGGGAGTTATTTGCTCGAGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAGCAGTCACAAAAGAGTAGAGCCCAGCCTCACATATCCCCGGTTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGGAATGTCTCAGCGGAGCAAATTAGATCAGACAATGCCACTTCTTCTGGTGTTAAGTTCCAGTTTAAATCATCAGGCGGTAAAAATTTGGCTTCTGAGAATCCTCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCACACTCTTTCGAAGCATCAAGAAGGAACTCCTTGAAGCCTTCCGCATCCACTGAAGCTGCGAACCATAGACATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTGCACATAAGTTCTGCTAAATAA 1275 0.4251 MDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQPHISPVPVASNNRAMPMDIDNQQGNVSAEQIRSDNATSSGVKFQFKSSGGKNLASENPLGKNIFGEATIPSTSHSFEASRRNSLKPSASTEAANHRHGQGSSKIGPSSSRMNVLHISSAK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2308 424 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2308 424 MobiDBLite consensus disorder prediction 375 424 - -
Mtr6g2308 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Mtr6g2308 424 PANTHER CASEIN KINASE-RELATED 1 408 - -
Mtr6g2308 424 Gene3D Transferase(Phosphotransferase) domain 1 1 342 - -
Mtr6g2308 424 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3-RELATED 1 408 - -
Mtr6g2308 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Mtr6g2308 424 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2308 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2308 424 MobiDBLite consensus disorder prediction 334 362 - -
Mtr6g2308 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Mtr6g2308 424 MobiDBLite consensus disorder prediction 334 359 - -
Mtr6g2308 424 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2308 Mtr-Chr6 40918763 40923638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2308 9 213 EF-hand Containing Proteins AT4G23650 29.384 9.96e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Mtr6g2308 Pkinase 6.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2308 K08960 - gmx:100805890 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2308 6 40918763 40923638 Mtr6g2308 6 40918763 40923638 ECH
Mtr8g3698 8 47482921 47489330 Mtr6g2308 6 40918763 40923638 PCT