LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g2293	ATGGCTAGCAGCAGCAACTCATCTTCAGCTCTTGTGACTTCATCAAGAAGAAATTATTATGATGTATTTGTCACCTTCAGAGGTGAAGATACTCGGAACAATTTCACGGATTTTCTTTTTGATGCCCTTCAAACAAAAGGCATTATTGTATTTTCGGATGACACTAATCTTCCAAAAGGTGAATCCATTGGACCCGAGCTCCTTCGAGCAATCGAAGGATCTCAGGTTTTTGTTGCGGTCTTTTCAATAAACTATGCTTCCTCAACATGGTGTTTACAAGAATTAGAAAAGATATGTGAATGCGTTAAGGGATCAGGAAAACATGTTCTTCCAGTTTTCTATGATGTTGATCCCTCTGAGGTGAGAAAGCAAAGTGGGATTTATGGTGAAGCCTTTATGAAACATGAACAAAGATTCCAACAAGAACATCAGAAGGTGTCAAAATGGAGGGACGCTCTAAAACAAGTGGGGAGTATCTCTGGTTGGGATCTACGTGATAAGCCGCAAGCTGGAGAGATTAAAAAGATTGTTCAAAAGATAATGAGTACATTGGAATGCAAATCTTCATGTGTTTCAAAAGACTTAGTTGCGATAGATTCTCGTTTAGAAGCATTACAAAATCATTTCCTTTTGGACATGGTTGATGGTGTTCGTGCTATAGGAATTTGGGGGATGGGAGGAATAGGGAAGACAACCCTTGCTATGAATTTATATGGCCAAATCTGTCATCGATTTGATGCATCCTGTTTCATTGATGATGTAAGCAAAATTTTTAGATTACATGATGGTCCAATCGATGCACAAAAGCAAATCCTACATCAAACTCTTGGCATAGAACACCATCAAATATGCAATCATTATAGTGCAACTGATTTGATAAGAAATAGGCTAAGTCGTGAAAAGACCCTTCTAATTCTTGATAATGTGGATCAAGTTGAACAATTGGAAAGAATAGGTGTGCATCGTGAATGGTTAGGTGCAGGTAGTAGAATCGTTATCATTTCAAGAGATGAGCATATATTGAAAGAGTATGGAGTGGATGTAGTTTACAAAGTCCCACTTCTGAATTGGGCCGAAGCTCACAAGTTATTTTGTAGAAAAGCTTTCAAAGCTGAGAAAATTATTATGAGTAATTATAAAAATTTGGCAAATGAGATATTGAGATATGCTAATGGTCTACCACTAGCAATTAAAGTATTGGGTTCATATTTGTTTGGTCGTAATGTGACTGAATGGAAGAGTACATTGGCTAGTTTGAGAGAAAGTCCAGATAATGATGTCATGGATGTGTTGCAATTAAGTTTTGATGGGCTAAAGGAAATGGAAAAAGAAATATTTCTCGATATTGCTTGTTTTTCAACCTTTCGGAATGAGAAATATGTTAAAAACATTTTAAATTGTTGTGGATTTCATGCTGATATTGGATTAAGTGTTCTCATTGCTAAATCACTTATAAGCATTAGTAATTCAAGAATTATAATGCATTCTTTGTTGCAAGAGCTAGGCCGAAAAATTGTGCAAAATAGTTCATGCAAAGAGCCAAGAAAATGGAGTAGGTTGTGGTCCGCAAAACAATTCTACAATGTTAAGATGGAGAATATGGAAAAGCAAGTTAAAGCCATAGTTTTGGATGATGAAGAGGTGGACGTTGAACAATTGTCAAAAATGAGTAATCTTAGATTGCTCATCATCAGGTACGGAATGTATATCTCAGGAAGCCCAAGTTGTCTTTCAAACAAATTGAGATATGTTGAGTGGGATGAATATCCTTCAAAGTATTTGCCATCAAGTTTTCACCCCAATGAACTTGTAGAATTGATCTTGGTGAAAAGCAACATTACACAACTATGGAAAAACAAGAAGTATCTGCCCAATTTGAGAACATTGGATCTAAGTCACTCCATCGAGCTAGAAAAGATAATAGATTTTGGAGAGTTCCCAAATCTTGAGTGGTTAAATTTGGAAGGATGTACAAATCTTGTTGAGTTGGATCCATCTATTGGACTTCTAAGAAATCTTGTTTACTTGAATTTAGAAAATTGCTATAACCTTGTAAGCATACCGAACACCATATTCGGTCTTGCTCTCTTAAATATCTAA	2100	0.3605	MASSSNSSSALVTSSRRNYYDVFVTFRGEDTRNNFTDFLFDALQTKGIIVFSDDTNLPKGESIGPELLRAIEGSQVFVAVFSINYASSTWCLQELEKICECVKGSGKHVLPVFYDVDPSEVRKQSGIYGEAFMKHEQRFQQEHQKVSKWRDALKQVGSISGWDLRDKPQAGEIKKIVQKIMSTLECKSSCVSKDLVAIDSRLEALQNHFLLDMVDGVRAIGIWGMGGIGKTTLAMNLYGQICHRFDASCFIDDVSKIFRLHDGPIDAQKQILHQTLGIEHHQICNHYSATDLIRNRLSREKTLLILDNVDQVEQLERIGVHREWLGAGSRIVIISRDEHILKEYGVDVVYKVPLLNWAEAHKLFCRKAFKAEKIIMSNYKNLANEILRYANGLPLAIKVLGSYLFGRNVTEWKSTLASLRESPDNDVMDVLQLSFDGLKEMEKEIFLDIACFSTFRNEKYVKNILNCCGFHADIGLSVLIAKSLISISNSRIIMHSLLQELGRKIVQNSSCKEPRKWSRLWSAKQFYNVKMENMEKQVKAIVLDDEEVDVEQLSKMSNLRLLIIRYGMYISGSPSCLSNKLRYVEWDEYPSKYLPSSFHPNELVELILVKSNITQLWKNKKYLPNLRTLDLSHSIELEKIIDFGEFPNLEWLNLEGCTNLVELDPSIGLLRNLVYLNLENCYNLVSIPNTIFGLALLNI*	700

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g2293	699	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	634	688	-	-
	Mtr6g2293	699	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	21	625	-	-
	Mtr6g2293	699	SMART	till_3	19	159	IPR000157	GO:0007165
	Mtr6g2293	699	Gene3D	-	355	439	IPR042197	-
	Mtr6g2293	699	PRINTS	Disease resistance protein signature	219	234	-	-
	Mtr6g2293	699	PRINTS	Disease resistance protein signature	296	310	-	-
	Mtr6g2293	699	PRINTS	Disease resistance protein signature	390	404	-	-
	Mtr6g2293	699	PRINTS	Disease resistance protein signature	621	637	-	-
	Mtr6g2293	699	SUPERFAMILY	L domain-like	494	695	-	-
	Mtr6g2293	699	Gene3D	-	1	157	IPR035897	-
	Mtr6g2293	699	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	449	IPR027417	-
	Mtr6g2293	699	Pfam	TIR domain	20	185	IPR000157	GO:0007165
	Mtr6g2293	699	Pfam	NB-ARC domain	203	423	IPR002182	GO:0043531
	Mtr6g2293	699	Gene3D	Ribonuclease Inhibitor	522	699	IPR032675	-
	Mtr6g2293	699	ProSiteProfiles	TIR domain profile.	18	181	IPR000157	GO:0007165
	Mtr6g2293	699	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	162	IPR035897	-
	Mtr6g2293	699	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	625	IPR044974	GO:0006952
	Mtr6g2293	699	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	634	688	IPR044974	GO:0006952
	Mtr6g2293	699	Gene3D	-	164	349	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g2293	Mtr-Chr6	40707655	40710563	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g2293	217	699	WRKY Transcription Factor Family	AT5G45050	33.398	3.73e-77	267

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g2293	-		-	mtr:MTR_6g488300	1375.15