Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2286 ATGGAAAGTTCTGAGATATTTTCTCAAAGAAGTAACAATGGCTTGAACCTCAAGGCTACTGAGTTAAGACTTGGTTTACCTGGTTCTGAATCACCAGAGAGAGATAATGATCTTCTTGAAGAAAAAAATGCATACTCTTTATGCATGCTTAATAGTTTATTTTCAGGTGCAAAAAGAGGTTTTTCAGATGCCATTGATATGAGAAAAAGTTCCAACCAACAAGGTTCTGTTGCGAAAGATCAAACAAATCCTTTGAACGAGAAGAAGAAGTCTCAGATATCTGGTTCAGCTGCAAAGGAACAAGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCAATGGCCACTCAATCTCAAAAGAATGATAATGATGATGTAGAAGCCAAATCTGGATGCCTTTATGTAAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAATTTTTGGCACTTACAAGGAACTATCTTCTGCACTAGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATTTGGCTCTCATGGAGTTTTTGGTCAAGGTAATGTTTGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTCCTCACCTATGAAGATAAAGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGAACACCAAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAGCAATCTTGGAATCCTCTTCTTTGTTTTGCTTATGTATAATCCTACATATGGAATCATAG 762 0.3753 MESSEIFSQRSNNGLNLKATELRLGLPGSESPERDNDLLEEKNAYSLCMLNSLFSGAKRGFSDAIDMRKSSNQQGSVAKDQTNPLNEKKKSQISGSAAKEQVVGWPPIRSFRKNSMATQSQKNDNDDVEAKSGCLYVKVSMDGAPYLRKVDLKIFGTYKELSSALEKMFSCFTISQFGSHGVFGQGNVCESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWNTKSHGKVQKSQLAILESSSLFCLCIILHMES* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2286 253 MobiDBLite consensus disorder prediction 69 98 - -
Mtr6g2286 253 PANTHER AUXIN-INDUCED PROTEIN 10 80 - -
Mtr6g2286 253 PANTHER AUXIN-INDUCED PROTEIN 79 240 - -
Mtr6g2286 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 79 240 IPR003311 GO:0005634|GO:0006355
Mtr6g2286 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 80 IPR003311 GO:0005634|GO:0006355
Mtr6g2286 253 MobiDBLite consensus disorder prediction 69 101 - -
Mtr6g2286 253 Pfam AUX/IAA family 20 223 IPR033389 -
Mtr6g2286 253 Gene3D - 128 247 - -
Mtr6g2286 253 SUPERFAMILY CAD & PB1 domains 132 222 - -
Mtr6g2286 253 ProSiteProfiles PB1 domain profile. 134 239 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2286 Mtr-Chr6 40645112 40648213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2286 137 222 B3 DNA Binding Superfamily AT3G61830 33.721 9.45e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr6g2286 AUX_IAA 8.6e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2286 K14484 - gmx:100803754 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2286 6 40645112 40648213 Mtr6g2286 6 40645112 40648213 ECH
Mtr8g3703 8 47524608 47528085 Mtr6g2286 6 40645112 40648213 PCT