Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2285 ATGAATAGAGGTGTTGTTCAAAGCTCTCCAGTGCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATAACATGAGGCCACCATCTCCACAACCTCCTCCTTTATTTTCATCTCCTTCTAACTTTCTCAACCCTAATTATGCACCAACTTCATCTTTTCTTCCTTTTTCTTCATGGCATGAAAATCATCAAGAGCTTCCCGAACCATGGAGTCAACAACTCATGGGTGGAATTGTGGGGGAGGAAGATAAGATTGGTATGAACCAATTTCAAAATCAAATGCTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAACTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACAAGTTTCAACAACAACAACAACATGTTGGATTTCACTAACAACAATAGTAATATAGATGTGAGGCATCCACCACTAGATCGATCTTCTGAGTGTAACAGCACTGCATCTGGTGGGGCAATGAAAAAAGCTAGGGTTCAACAATCTACAACTCAAGCTACTTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCACTTCATCAGATTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTACATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTACCATACTTGAGCAATGGATCAGGAAATACAAGGCAGCCACAATCAATTCAAGGAGAGAATAATTGTTTATTCCCTGAAGACCCTGGTCAGCTCCTAAATGAAAATGGCTTGAAGAGGAAAGCAGCTGAAGAGGTTTCTCAAGAAGAACCAAAGAAGGACCTAAAGAGTAGAGGTTTGTGTCTTGTTCCAGTGTCATGTACACTACAAGTTGGGAATGACAATGGAGCTGATTATTGGGCACCTGCCCTAGGAGGAGGCTTTCGGTAG 972 0.4064 MNRGVVQSSPVQQMMASNPNWWNINNMRPPSPQPPPLFSSPSNFLNPNYAPTSSFLPFSSWHENHQELPEPWSQQLMGGIVGEEDKIGMNQFQNQMLISQAPNASLVDVKQENSGNSYAYGHGNEELNSCVTSFNNNNNMLDFTNNNSNIDVRHPPLDRSSECNSTASGGAMKKARVQQSTTQATFKVRKEKLGDRITALHQIVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSNGSGNTRQPQSIQGENNCLFPEDPGQLLNENGLKRKAAEEVSQEEPKKDLKSRGLCLVPVSCTLQVGNDNGADYWAPALGGGFR* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2285 323 PANTHER OS05G0228400 PROTEIN 16 309 - -
Mtr6g2285 323 Gene3D - 175 237 IPR036638 GO:0046983
Mtr6g2285 323 CDD bHLH_AtbHLH_like 185 234 IPR045239 -
Mtr6g2285 323 MobiDBLite consensus disorder prediction 242 256 - -
Mtr6g2285 323 MobiDBLite consensus disorder prediction 156 181 - -
Mtr6g2285 323 MobiDBLite consensus disorder prediction 242 263 - -
Mtr6g2285 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Mtr6g2285 323 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 309 - -
Mtr6g2285 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2285 Mtr-Chr6 40604419 40610067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2285 1 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.228 2.94e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2285 - - vvi:100249096 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2285 6 40604419 40610067 Mtr6g2285 6 40604419 40610067 ECH
Mtr8g3705 8 47556862 47560933 Mtr6g2285 6 40604419 40610067 PCT