Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2276 ATGGATCCTCCAACAAAAAGTTGGAGCATCCATACCCGACCCGAAATCACAACCAAATACTCCATCTTCACCCACATCGGCTCCGGCACCTACTCCGACGTCTACAGCGGCCGCCGTCTCTCCGACGGAACACCCGTCGCGTTGAAAGAAATCCACGATCACCAATCAGCATCACGAGAAATCACCGCTTTACGCATTCTTCGGGGCTCCGAAAACGTGGTTTTCATGCATGAGTTCTTCTGGAGAGAGGATGAAGATGCTGTGATTGTGTTGGAGTTTTTGAAGAGTGATCTGGGTACTGTGATCAGAGATGGGTTTGGTGGTGGTGAAGTGAAAGGGTGGATGATGCAGATTGTTAGTGGGGTTTATGATTGTCATAGGAATGGGATTGTTCACAGAGATTTGAAGCCGGAGAATTTCTTGGTTTCGGAAAATGGGGTTTTGAAAATTGCTGATTTTGGACAGGCAAGGATACTTGTGAAGTCTGGATTTGATGCAACAAATCATGGAAGTTCATCCCATTCCCAACATCCTCATGATGTTATTCCCTTATCAGACAATGCAAACCAAACTGGATATGAAAATCAAGACGAGGAGGAAAGAATGACTCATGATGAATATTTTAGAGTGTTAGATGAGCTGAAAATTCAGAGTCACACATATGACACTGATGATAAGGACACCAACACGCATGACGGTAACAACTCGTGCCGTGCAACATGCACAACTAGTGACGACGACGATGATGCTTGGAAGAATTCTTTGCCATATGAAGCAAATGAAGAGAGGGATGAAAAACTAGATGGTTTCCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCACCTGAACTACTTTATGGATCAACTAATTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTCTTCGCTGAGTTGTTAACATTGAAGCCTTTGTTTCCTGGAACAGGTGATATTGATCAGATTAGTAGAATCATTAGTGTTTTGGGTAATCTCGATGAGGAAGCTTGGAGTGGTTGTTCTAAACTTCCTGATTATGCAAGAATTTCTTTTAATAAGGTGGAAAACCCTATTGGTCTTGACGCGTGCATGCCAAATTGTTTGCAAGATGAAGTTTCCTTGGTCAAAAGATTGCTCTGTTATGATCCAGCTCAGAGAGCCACTGCGGCGGAGTTACTTCATGACAAGTACTTCTCTGAAGAACAACTTCCTGTTCCTATTTCTCAGCTAAGAGTTCCTTCAACTTAA 1254 0.4298 MDPPTKSWSIHTRPEITTKYSIFTHIGSGTYSDVYSGRRLSDGTPVALKEIHDHQSASREITALRILRGSENVVFMHEFFWREDEDAVIVLEFLKSDLGTVIRDGFGGGEVKGWMMQIVSGVYDCHRNGIVHRDLKPENFLVSENGVLKIADFGQARILVKSGFDATNHGSSSHSQHPHDVIPLSDNANQTGYENQDEEERMTHDEYFRVLDELKIQSHTYDTDDKDTNTHDGNNSCRATCTTSDDDDDAWKNSLPYEANEERDEKLDGFLTSCVGTRWFRAPELLYGSTNYGLEVDLWSLGCVFAELLTLKPLFPGTGDIDQISRIISVLGNLDEEAWSGCSKLPDYARISFNKVENPIGLDACMPNCLQDEVSLVKRLLCYDPAQRATAAELLHDKYFSEEQLPVPISQLRVPST* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2276 417 SUPERFAMILY Protein kinase-like (PK-like) 6 411 IPR011009 -
Mtr6g2276 417 MobiDBLite consensus disorder prediction 167 186 - -
Mtr6g2276 417 Pfam Protein kinase domain 266 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2276 417 Pfam Protein kinase domain 20 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2276 417 PANTHER CELL DIVISION PROTEIN KINASE 18 406 - -
Mtr6g2276 417 ProSiteProfiles Protein kinase domain profile. 20 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2276 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Mtr6g2276 417 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Mtr6g2276 417 PANTHER CYCLIN-DEPENDENT KINASE 10 18 406 - -
Mtr6g2276 417 SMART serkin_6 20 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2276 417 Gene3D Transferase(Phosphotransferase) domain 1 105 408 - -
Mtr6g2276 417 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2276 Mtr-Chr6 40516308 40519667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2276 4 417 Core Cell Cycle Gene Families AT4G28980 59.815 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Mtr6g2276 Pkinase 5.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2276 - - gmx:548056 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2276 6 40516308 40519667 Mtr6g2276 6 40516308 40519667 ECH
Mtr8g3708 8 47598595 47601418 Mtr6g2276 6 40516308 40519667 PCT