Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2272 ATGGCTAGCAGCAGCAAATCATCTTCAGCTCTTGTGACTTCTTCAAAGAAAAATCATTATGATGTGTTTGTCACCTTTAGAGGTGAAGATACTCGCAACAATTTCACTGATTTTCTTTTTGATGCCCTTGAAACAAAAGGCATTATGGTATTTCGGGATGTCATTAATCTTCAAAAAGGTGAATGCATAGGACCTGAGCTTTTTCGTGCAATCGAAATATCTCAGGTTTACGTTGCGATCTTCTCAAAGAACTATGCTTCCTCAACGTGGTGCTTGCAAGAATTAGAAAAGATATGTGAATGCATTAAGGGGTCGGGAAAACATGTTCTTCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGCGGAAGCAAAGTGGAATTTATAGTGAAGCTTTTGTCAAACATGAACAAAGATTCCAACAAGACTCTATGAAGGTGTCAAGATGGAGAGAAGCTCTAGAGCAAGTGGGGAGTATATCTGGTTGGGATCTACGTGATGAGCCACTAGCTAGAGAAATTAAAGAGATTGTTCAAAAGATAATCAATATATTGGAATGCAAATATTCATGTGTTTCAAAAGATTTAGTTGGGATTGATTCTCCTATACAAGCATTACAAAATCATTTGCTTTTGAACTCAGTTGATGGTGTTCGTGCTATAGGAATTTGTGGAATGGGAGGAATAGGGAAAACAACCCTTGCTACGACTTTATATGGCCAAATATCTCATCAATTTAGTGCATCTTGTTTTATTGACGATGTAACCAAAATTTATGGATTACATGATGATCCACTCGATGTACAAAAACAAATCCTATTTCAAACTCTCGGCATAGAACACCAACAAATATGCAATCGTTACCATGCAACTACTTTGATACAAAGGAAGCTATGTCATGAAAGAACCCTTATGATTCTTGATAATGTGGACCAAGTTGAACAATTGGAGAAAATAGCGGTGCATCGTGAATGGTTAGGTCCAGGTAGTAGAATTATTATCATTTCTAGAGATGAGCATGTATTGAAAGCGTATGGAGTGGATGTAGTTTACAAAGTTTCACTATTGGATTGGAATGAAGCTCACATGTTATTTTGTCGAAAAGCTTTCAAAGATGAGAAAATTATTATGAGTAATTATCAAAATTTGGTAGATCAGATACTACATTATGCTAAAGGTCTACCACTAGCAATTAAAGTATTGGGCTCGTTTTTGTTTGGTCGTAATGTGACTGAATGGAAGAGTGCATTGACTAGATTGAGACAAAGTCCAGTTAAAGATGTCATGGATGTGCTGCAATTAAGTTTTGATGGGCTCAATGAAACGGAAAAAGACATATTTCTTCATATTGCTTGTTTTTTCAACAACGATTCGGAGGAAGATGTTAAAAACATTCTAAACTGTTGTGGATTTCATGCTGATATTGGATTAAGAGTTCTCATTGATAAATCACTTGTAAGCATTAGTTATTCAATTATTAACATGCATTCTTTGTTGGAAGAGCTAGGCAGAAAAATTGTGCAAAATAGTTCAAGCAAAGAACCAAGAAAATGGAGCAGGTTGTGGTCCACAGAACAACTCTACGATGTTATGTTGGAGAATATGGAAAAGCATGTTGAAGCCATAGTTTTGTATTACAAAGAAGATGAAGAGGCGGACTTTGAACACTTGTCAAAAATGAGTAATCTCAGATTGCTCTTCATCGCCAACTATATTTCAACGATGTTAGGATTCCCAAGCTGTCTTTCGAACAAATTAAGATTTGTTCACTGGTTTAGATATCCTTCCAAGTATTTGCCATCAAATTTTCACCCCAATGAACTTGTAGAATTGATCTTGACGGAGAGCAACATTAAACAACTATGGAAAAACAAGAAGTATCTTCCCAATTTGAGAACATTGGATCTACGTCACTCCAGAAATCTAGAAAAGATAATAGATTTTGGAGAGTTCCCGAATCTTGAGCGTTTAGATTTGGAAGGATGTATAAACCTTGTTGAGTTGGATCCATCTATTGGACTTCTAAGAAAGCTTGTTTACTTGAACCTAAAAGATTGCAAAAGTCTAGTTAGCATACCCAACAACATATTCGGTCTTAGCTCTCTTCAATACCTAAATATGTGTGGCTGTTCCAAAGTATTTAACAACCCAAGGCGTTTGATGAAGTCTGGTATATCCTCAGAAAAGAAGCAGCAGCATGATATACGTGAAAGTGCATCACATCACCTCCCTGGCCTAAAATGGATCATTTTGGCTCACGATTCATCACATATGTTGCCTTCCTTGCATAGTTTATGTTGTTTGCGTAAGGTTGACATAAGCTTTTGCTATCTAAGCCATGTGCCTGATGCAATTGAATGTTTACATTGGCTAGAAAGATTAAATTTAGCGGGAAACGATTTTGTGACATTACCTAGCCTGAGGAAGCTATCCAAACTTGTATATTTAAATTTGGAGCATTGCAAATTGTTGGAATCTTTGCCTCAACTTCCTTTTCCTACCAATACTGGGGAGGTTCATCGTGAGTACGACGACTATTTTTGTGGTGCAGGATTGCTCATTTTCAACTGTCCAAAATTGGGTGAGAGGGAACATTGCAGGAGCATGACACTTTTATGGATGAAACAATTCATTAAGGCAAACCCACGTTCCTCTTCTGAGATTCAAATAGTTAATCCAGGAAGTGAAATACCAAGTTGGATCAACAATCAGAGGATGGGTTATTCAATAGCAATAGACCGATCTCCTATTAGGCATGACAATGACAATAATATCATTGGTATTGTATGTTGTGCAGCATTTACGATGGCACCCTATCGTGAAATTTTTTATTCCTCGGAGTTGATGAATCTGGCTTTCAAGCGTATTGATTCCAATGAGAGGTTGTTGAAAATGAGAGTTCCAGTAAAGCTCAGTCTTGTTACGACCAAATCAAGTCACCTATGGATTATCTACTTACCCCGAGAGTACCCCGGGTATTCCTGTCATGAATTTGGAAAAATAGAATTAAAATTTTTTGAGGTGGAAGGTTTGGAGGTCGAGAGTTGCGGTTATCGTTGGGTATGTAAACAAGATATACAAGAATTCAATTTAATCATGAATCACAAAAATTCCTTAACTCCAAAGTGCAAAATTTTGACAATTGAAGATGAGACACAACCAGAACCGCAACCATAA 3174 0.3693 MASSSKSSSALVTSSKKNHYDVFVTFRGEDTRNNFTDFLFDALETKGIMVFRDVINLQKGECIGPELFRAIEISQVYVAIFSKNYASSTWCLQELEKICECIKGSGKHVLPVFYDVDPSEVRKQSGIYSEAFVKHEQRFQQDSMKVSRWREALEQVGSISGWDLRDEPLAREIKEIVQKIINILECKYSCVSKDLVGIDSPIQALQNHLLLNSVDGVRAIGICGMGGIGKTTLATTLYGQISHQFSASCFIDDVTKIYGLHDDPLDVQKQILFQTLGIEHQQICNRYHATTLIQRKLCHERTLMILDNVDQVEQLEKIAVHREWLGPGSRIIIISRDEHVLKAYGVDVVYKVSLLDWNEAHMLFCRKAFKDEKIIMSNYQNLVDQILHYAKGLPLAIKVLGSFLFGRNVTEWKSALTRLRQSPVKDVMDVLQLSFDGLNETEKDIFLHIACFFNNDSEEDVKNILNCCGFHADIGLRVLIDKSLVSISYSIINMHSLLEELGRKIVQNSSSKEPRKWSRLWSTEQLYDVMLENMEKHVEAIVLYYKEDEEADFEHLSKMSNLRLLFIANYISTMLGFPSCLSNKLRFVHWFRYPSKYLPSNFHPNELVELILTESNIKQLWKNKKYLPNLRTLDLRHSRNLEKIIDFGEFPNLERLDLEGCINLVELDPSIGLLRKLVYLNLKDCKSLVSIPNNIFGLSSLQYLNMCGCSKVFNNPRRLMKSGISSEKKQQHDIRESASHHLPGLKWIILAHDSSHMLPSLHSLCCLRKVDISFCYLSHVPDAIECLHWLERLNLAGNDFVTLPSLRKLSKLVYLNLEHCKLLESLPQLPFPTNTGEVHREYDDYFCGAGLLIFNCPKLGEREHCRSMTLLWMKQFIKANPRSSSEIQIVNPGSEIPSWINNQRMGYSIAIDRSPIRHDNDNNIIGIVCCAAFTMAPYREIFYSSELMNLAFKRIDSNERLLKMRVPVKLSLVTTKSSHLWIIYLPREYPGYSCHEFGKIELKFFEVEGLEVESCGYRWVCKQDIQEFNLIMNHKNSLTPKCKILTIEDETQPEPQP* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2272 1057 Gene3D Ribonuclease Inhibitor 737 838 IPR032675 -
Mtr6g2272 1057 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 162 IPR035897 -
Mtr6g2272 1057 Pfam TIR domain 20 182 IPR000157 GO:0007165
Mtr6g2272 1057 Gene3D - 187 349 IPR027417 -
Mtr6g2272 1057 Gene3D - 355 439 IPR042197 -
Mtr6g2272 1057 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 638 828 IPR044974 GO:0006952
Mtr6g2272 1057 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 631 IPR044974 GO:0006952
Mtr6g2272 1057 Gene3D - 13 186 IPR035897 -
Mtr6g2272 1057 SUPERFAMILY "Winged helix" DNA-binding domain 426 529 IPR036390 -
Mtr6g2272 1057 Pfam NB-ARC domain 201 427 IPR002182 GO:0043531
Mtr6g2272 1057 SUPERFAMILY L domain-like 556 830 - -
Mtr6g2272 1057 SMART till_3 19 159 IPR000157 GO:0007165
Mtr6g2272 1057 Gene3D Ribonuclease Inhibitor 536 736 IPR032675 -
Mtr6g2272 1057 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 638 828 - -
Mtr6g2272 1057 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 631 - -
Mtr6g2272 1057 ProSiteProfiles Leucine-rich repeat profile. 789 810 IPR001611 GO:0005515
Mtr6g2272 1057 PRINTS Disease resistance protein signature 219 234 - -
Mtr6g2272 1057 PRINTS Disease resistance protein signature 296 310 - -
Mtr6g2272 1057 PRINTS Disease resistance protein signature 390 404 - -
Mtr6g2272 1057 PRINTS Disease resistance protein signature 625 641 - -
Mtr6g2272 1057 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
Mtr6g2272 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2272 Mtr-Chr6 40485540 40489404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2272 15 824 WRKY Transcription Factor Family AT4G12020 30.513 2.61e-82 292