Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2263 ATGGCGGAAGGTGAAGGAGGAGATTGTCCTCCAAAGAATGTTGTTCATCCGGAATTTGTTACGGTTACGGCTGCGGCTGCAACTGCGGCTGCGGCTGCCAATGCGACTGCGACGGCGTGGTTGGATGTACCGTCGAAGAAACTAGCGAGGCAGCTTGATTTCAATGCGATGTTGATGGAACAGTCGAAACCGCAGCAGCAGGTGGTGACACAGGGGAGTGTGATGGTGCAGAAACCGGTTGGAGTGGGTGGTTTGCCGATGCCGGTGCCGGCACAGGTGCAAACACTTCAACACTCTTCTGTGAGGGTTGGGAAACAAGAATCTCCCAAACCAAGATCAAGACCTAATTTTGAAGTGAAAGAAGGTACTCCAAAGAAGCAAAGGCAGTGCAATTGTAAACATTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCGTCAGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGACAATGAAGCTGCTAGGCGAGAGGCTGTTGAAGCTACTTTAGAGCGTAATCCAAATGCATTTAGGCCCAAAATTGCGAGCAGCCCTCAGGGAGCACGCGATAGCAGGGAGGAGGCTGGGGAAGGTTTAATATTAATAAAGCATCACAAGGGGTGCCATTGTAAAAAATCCGGCTGCCTTAAGAAGTACTGTGAATGCTTCCAAGCCAATGTTCTTTGTTCTGAGAATTGTAGATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCTTTATTTCGTGGAGATCAAAATAACAATGTGTATCTTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTTTTCATCACCTCCAGCATCAAAGAAAAGAAAAGGTCAGGAACTCTTCTTATGGCCTACAGCCAAGGATCCATCAATTAGCAAGCCGGGACAACAGGTAAACCTTGTCAAAGGTCCAGCACCCTCCTCATCAGCTTCACCTGTCTCAAGTGCTCGTGGTACAAATCCAACATTAGGTCAGAGTCCGTCAAAATTAAAGTACAGGTCTCTTTTATCAGACGTTGTACAACCACATCACCTCAAGGAGCTTTGTTCAGTTCTGGTACTTGTATCTGGCCAAGCTGCAAAGACGCTTGCAGACCAGAAAAAAACAGTGGAAAAGCGTACAGAAGATCAGACAGAAACTTCCCTTGCTTCATCAACTCAAGAGCAATTACTGAGTCAAAAAGAAGTTGATGTTGAGAAGGCTATGGATGATGATTGTTCAAGTGCAAATCAAACAGATAAAATCAGCCCTGGTAATTCATGTTCAGATGGCGCTGATGTCCCAAAAAGACCGATGTCTCCTGGGACTTTAGCCTTGATGTGTGACGAGCAAGATTCAATGTTCATGACAGCTGCCTCTCCCATCGGACAAACGACCCATGCCTGCAATACATCTTCGCAATTTCCTGACGGACAAGGAGTGACAGAGGTTTATGCTGAACAAGAAAGAATAGTATTAACGCAATTTAGAGATTTTCTCAATAGAGTTATTACTATGGGCGAGATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGAATTAGAGAATAAAAAGGATCTAATTAACAATGAAACTGGAAATGCCAGTACTGAGACAGTACATCAGCAGGAAGCCACTAGCAATGGTGATGCCAAAGCTGCAATTCCACCTATGGCCGCAACTTCAACACCTGCAGTTCCACCTATGGCCACAACTTCAACACCTGTGGTCCCTAGTGATACTGTAGCTGAAAATGGAGAATCCAAGCTGAAGATGGAAAATTAG 1824 0.4474 MAEGEGGDCPPKNVVHPEFVTVTAAAATAAAAANATATAWLDVPSKKLARQLDFNAMLMEQSKPQQQVVTQGSVMVQKPVGVGGLPMPVPAQVQTLQHSSVRVGKQESPKPRSRPNFEVKEGTPKKQRQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREEAGEGLILIKHHKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFEGSEERQALFRGDQNNNVYLQQAANAAITGAIGSYGFSSPPASKKRKGQELFLWPTAKDPSISKPGQQVNLVKGPAPSSSASPVSSARGTNPTLGQSPSKLKYRSLLSDVVQPHHLKELCSVLVLVSGQAAKTLADQKKTVEKRTEDQTETSLASSTQEQLLSQKEVDVEKAMDDDCSSANQTDKISPGNSCSDGADVPKRPMSPGTLALMCDEQDSMFMTAASPIGQTTHACNTSSQFPDGQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSELENKKDLINNETGNASTETVHQQEATSNGDAKAAIPPMAATSTPAVPPMATTSTPVVPSDTVAENGESKLKMEN* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2263 607 MobiDBLite consensus disorder prediction 309 347 - -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 545 607 - -
Mtr6g2263 607 ProSiteProfiles CRC domain profile. 126 250 IPR005172 -
Mtr6g2263 607 PANTHER TESMIN/TSO1-RELATED 62 576 IPR028307 -
Mtr6g2263 607 SMART CXC_2 125 165 IPR033467 -
Mtr6g2263 607 SMART CXC_2 210 251 IPR033467 -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 105 120 - -
Mtr6g2263 607 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 62 576 - -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 382 446 - -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 305 347 - -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 97 120 - -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 545 562 - -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 578 594 - -
Mtr6g2263 607 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 128 162 IPR005172 -
Mtr6g2263 607 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Mtr6g2263 607 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2263 Mtr-Chr6 40371498 40377810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2263 43 535 CPP Transcription Factor Family AT4G29000 56.226 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Mtr6g2263 TCR 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2263 - - gmx:100818116 776.548