Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2260 ATGTCGACTGCTCCTGCACCATCTTCGCCGCCGGCGGGTAACGCCACCGCACCACCACCAGCAACACCTACTGCACCACCACCTGCAACACCTTCATCACCACCACCTGCAACACCTTCATCACCACCTCCGGCAACACCTTCATCACCTCCGCCGTCAACTCCGGCGAATCCACCACCGGTCACCCCATCTGCTCCGCCTCCTTCTACCCCGGCAACACCTTCATCACCACCTCCGTCGACGACTCCATCAGCACCACCACCATCAACACCTTCAAATTCACCACCCTCGCCACCAACAACTCCGGCGATATCACCACCGTCCGGAGGAGGCACTACTCCGTCTCCACCTTCCCGGACTCCACCAAGCTCTGATGACAGTCCATCACCACCATCCTCCAAAACTCCGCCGCCACCTTCACCACCGTCTTCATCAAGTATATCAACAGGAACTGTCATCGGAATCGCCGTTGGAGCGGTGGTGGTTCTGGTGTTTTTCAGCATTTGTTGCATTTGCTTTAGGAAGAAGAAGAGAAGAAGACGTGATGAAGAATACTATGGTCAGCAGAATTATCAGCAACCACCACCAGCACAGAGACCCAAAGTTGAACCTTATGGTGGTCCACCACAACAATGGCAAAATAATGCTCACCCTCCTTCTGATCATGTAGTCTCAAAGCCACCGCCTCCTGCTCCAATTCCACCACGACCACCATCTCATGTTGCACCACCGCCGCCACCTCCCGCTTTCATCAGCAGCAGCGGTGGTTCCGGATCAAACTATTCTGGCGGCGAACTGCTTCCACCTCCTTCTCCAGGCATTGCATTTAGCTCCGGAAAAAGCACGTTTACATATGAGGAGTTGGCGCGTGCAACCGACGGTTTCTCTGATGCTAACCTCCTCGGTCAAGGTGGATTTGGATATGTGCATAGAGGTATTCTCCCTAATGGTAAAGAGGTTGCTGTTAAGCAGCTGAAAGCTGGTAGCGGACAAGGAGAACGCGAATTTCAAGCTGAAGTTGAGATTATTAGCCGTGTTCATCATAAACATCTTGTTTCTCTTGTTGGATACTGCAGCACTGGGTTTCAGAGACTTCTTGTTTACGAATTTGTTCCTAACAATACTCTGGAATTCCATTTACATGGAAAAGGAAGACCAACAATGGATTGGTCTACAAGACTGAGAATTGCTTTAGGATCTGCTAAAGGACTTGCATATCTTCATGAAGATTGTCATCCTAAGATCATTCACCGTGATATTAAAGCTGCTAACATACTTCTCGATTTTAAGTTTGAAGCAAAGGTTGCTGATTTTGGTCTTGCAAAGATTGCTTCTGATCTCAACACTCATGTTTCTACTCGAGTGATGGGGACTTTCGGGTATCTGGCTCCAGAATATGCTGCTAGTGGAAAACTTACCGATAAATCAGATGTTTTCTCTTATGGAGTCATGCTCCTTGAGTTATTAACTGGACGACGACCGGTTGATAAAGATCAGACTTACATGGATGATAGTTTGGTTGAGTGGGCTAGGCCTTTGCTCATGCGTGCTTTAGAAGAAGATAATTTAGATTCTCTGATTGATCCAAGGCTTCAGAATGATTTTGACCCTAATGAGATGACTCGTATGGTGGCATGCGCTGCAGCTTGCACACGTCACTCAGCAAAGCGTCGACCAAAGATGAGCCAGGTTGTGCGCGCTCTAGAAGGAGACGTGTCACTAGCAGATCTTAATGAAGGGGTTAGACCTGGACACAGCAGTGTCTACAATTCTCACGAGAGCTCCGATTACGATACTCAACAATACAAAGAAGACATGATAAAATTCAGAAAAATGGCATTAGGAACTCAAGAGTATGCCGGAAGCAGCGAGTATAGTGGAGCTACTAGTGAATACGGTTTAAACCCGTCTGGCTCAAGCAGCGAAAACCAAAGCCGTCAGACAACAAGGGAAATGGGCCAGACAACAAGGGAAATGGAAATGAGAAAGATGAAGAATGGTCAAGGATTCAGTGGAAGTTCATGA 2025 0.481 MSTAPAPSSPPAGNATAPPPATPTAPPPATPSSPPPATPSSPPPATPSSPPPSTPANPPPVTPSAPPPSTPATPSSPPPSTTPSAPPPSTPSNSPPSPPTTPAISPPSGGGTTPSPPSRTPPSSDDSPSPPSSKTPPPPSPPSSSSISTGTVIGIAVGAVVVLVFFSICCICFRKKKRRRRDEEYYGQQNYQQPPPAQRPKVEPYGGPPQQWQNNAHPPSDHVVSKPPPPAPIPPRPPSHVAPPPPPPAFISSSGGSGSNYSGGELLPPPSPGIAFSSGKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGKGRPTMDWSTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKDQTYMDDSLVEWARPLLMRALEEDNLDSLIDPRLQNDFDPNEMTRMVACAAACTRHSAKRRPKMSQVVRALEGDVSLADLNEGVRPGHSSVYNSHESSDYDTQQYKEDMIKFRKMALGTQEYAGSSEYSGATSEYGLNPSGSSSENQSRQTTREMGQTTREMEMRKMKNGQGFSGSS* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2260 674 MobiDBLite consensus disorder prediction 623 674 - -
Mtr6g2260 674 MobiDBLite consensus disorder prediction 222 251 - -
Mtr6g2260 674 MobiDBLite consensus disorder prediction 1 148 - -
Mtr6g2260 674 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 42 651 - -
Mtr6g2260 674 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 42 651 - -
Mtr6g2260 674 SUPERFAMILY Protein kinase-like (PK-like) 273 568 IPR011009 -
Mtr6g2260 674 MobiDBLite consensus disorder prediction 179 275 - -
Mtr6g2260 674 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Mtr6g2260 674 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2260 674 PRINTS Proline rich extensin signature 16 28 - -
Mtr6g2260 674 PRINTS Proline rich extensin signature 31 52 - -
Mtr6g2260 674 PRINTS Proline rich extensin signature 52 68 - -
Mtr6g2260 674 SMART serkin_6 295 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2260 674 Gene3D Transferase(Phosphotransferase) domain 1 371 579 - -
Mtr6g2260 674 Gene3D Phosphorylase Kinase; domain 1 271 370 - -
Mtr6g2260 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Mtr6g2260 674 Pfam Protein tyrosine and serine/threonine kinase 300 568 IPR001245 GO:0004672|GO:0006468
Mtr6g2260 674 MobiDBLite consensus disorder prediction 623 652 - -
Mtr6g2260 674 MobiDBLite consensus disorder prediction 11 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2260 Mtr-Chr6 40329485 40333745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2260 127 650 Trihelix Transcription Factor Family AT1G70460 49.618 2.16e-167 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Mtr6g2260 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2260 - - gmx:100781944 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2260 6 40329485 40333745 Mtr6g2260 6 40329485 40333745 ECH