Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2259 ATGCAACCTCAGGAACCAGAAGTAGCACTACCATTTGAATTTGAACTAAATCAAGGTGAGAGTTTTCGTCAAGGACATCTGCCTCGTCCTTTTCTATCGCGGTCTAATGCTTTTCTACCAAGACGTCTGCCATCATCACCACCATCATCTCCTGATGGTTCTCAATCAGGAGGAAGTCTGTCACCTCCATCATTGCTCCCTCATGCTCCATCAAGAGGCGAGCTGCTTCAGCTTTCTTCTTCAAGCATTGCATTTGGCTCCAGCAAGAGCATGTTTAGCTATAAGGAGCTTTGGGACGGAACGGATGGCTTCTCTGATGCTAACTACCTAGGAAAAGGGGGATTTGGATCTGTACACAAAGGTATTCTCCCTGATGGTAAAGAGATTGCTGTTAAGCAGCTGAAAGCTGATAGCAGTCAAGGAGAAAGCGAATTTAAAGCTGAAGTTGAGATTATTAGCCGTGTTCATCACAAACATCTTGTCTCTCTTGTTGGATACTGCAGCGCTGGTTATGAGATGCTACTTGCTTATGAATTTGTTCCTAACAAAACATTGGAATTCCATTTACATGGAAAAGCTCAAACGATACTTGATTGGTCAGCAAGACAACTAATTGCTGTAGGATCTGCGAAAGGACTTGAATATCTTCATGAAGATTGTAATCCTAAGATCATTCACCGTGATATTAAAGCTGCTAACATCCTTCTCGATTCTAAGTTTGAAGCAAAGGTTGCTGATTTTGGTCTTGCAAAGGATTCACCTGATTCCAGCACTCACGTTTCTACTCAAGTGAAGGGGACTTTCGGGTATCTGGATCCAGAATATGCTTATACTGGACGACTTACTGATAAATCCGATGTTTACTCTTATGGAGTCGTGCTCCTTGAGTTAATAACTGGACGAGTAGCGATTGATAAAGCTAACCCTCACATGGACGTTAATTTGGTTGAGTGGGCTAGGCCTTTTTTCATGCGTGCTTTAAAAGGAAAAAATGATCTGGTTGATCCAAGGCTTAAGAAGCAATTTGACCGTAAAGAGATGACTCATATGGTAGCATGCGCTGCAGCTTGCACGCGTCAGTCAGCAAAGGATCGACCAAAGATGAGCCAGGTTGTGCGAGTTCTGGAAGGAGCTGTGCCAGTAGAAACTCTTAAAGCAGGGGTTACACGTGGACACAGCAGGGGTTACAGCAGAGACTACAATAGTCAACAACACAGAGAAGAAGGCATGACAAAGTTGAAAAAAATAGCATCCGTTTTGAAAGGGAAATGGAAATCAGAACAGTGA 1287 0.4312 MQPQEPEVALPFEFELNQGESFRQGHLPRPFLSRSNAFLPRRLPSSPPSSPDGSQSGGSLSPPSLLPHAPSRGELLQLSSSSIAFGSSKSMFSYKELWDGTDGFSDANYLGKGGFGSVHKGILPDGKEIAVKQLKADSSQGESEFKAEVEIISRVHHKHLVSLVGYCSAGYEMLLAYEFVPNKTLEFHLHGKAQTILDWSARQLIAVGSAKGLEYLHEDCNPKIIHRDIKAANILLDSKFEAKVADFGLAKDSPDSSTHVSTQVKGTFGYLDPEYAYTGRLTDKSDVYSYGVVLLELITGRVAIDKANPHMDVNLVEWARPFFMRALKGKNDLVDPRLKKQFDRKEMTHMVACAAACTRQSAKDRPKMSQVVRVLEGAVPVETLKAGVTRGHSRGYSRDYNSQQHREEGMTKLKKIASVLKGKWKSEQ* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2259 428 SMART serkin_6 104 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2259 428 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Mtr6g2259 428 MobiDBLite consensus disorder prediction 37 71 - -
Mtr6g2259 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Mtr6g2259 428 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 76 418 - -
Mtr6g2259 428 Gene3D Phosphorylase Kinase; domain 1 73 179 - -
Mtr6g2259 428 Gene3D Transferase(Phosphotransferase) domain 1 180 386 - -
Mtr6g2259 428 ProSiteProfiles Protein kinase domain profile. 104 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2259 428 MobiDBLite consensus disorder prediction 39 62 - -
Mtr6g2259 428 CDD STKc_IRAK 110 377 - -
Mtr6g2259 428 Pfam Protein tyrosine and serine/threonine kinase 109 375 IPR001245 GO:0004672|GO:0006468
Mtr6g2259 428 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK1 76 418 - -
Mtr6g2259 428 SUPERFAMILY Protein kinase-like (PK-like) 84 375 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2259 Mtr-Chr6 40296458 40301657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2259 28 417 Trihelix Transcription Factor Family AT1G70460 52.792 6.78e-130 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Mtr6g2259 PK_Tyr_Ser-Thr 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2259 - - osa:4338122 442.965