Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2250 ATGGGAATGGAGCAAAACAACGTGATTGCACCGTTCATTATGAAGACATACCACATGGTTAATGAACCAAACACAGATAACCTTATCAAGTGGGGCCCATCTAACAATAGTTTCATTGTTCTTGATCCCTTAGAATTTTCTCACTCTCTTCTTCCTCTTTTCTTCAAACACAACAATTTCTCTAGCTTTGTTCGTCAACTCAACACTTATGGTTTCAGAAAAGTGGATCCGGATAGATGGGAATTTGCGAATGAGTGGTTTCTAAGAGGACAAAAACACTTGTTGAAGAACATAGTTAGGAAGAAACATGTTGGTGGTATTGGAAATGGAAGGAATAATAATTGTTATAACAATAATAATTATTTTAATGAGGTGAAGTTTGAAGATTTAGAAGAAGATGAAGCTATGGTGACGGAAATAATGAAGTTGAAAGAAGAACAAAGAAATTTAGAAGAAGAGCTTCAAGGAATGAACAAAAGATTAGAAACAACTGAGAAAAGACCACAACAAATGATGGCGTTTTTATGTAATGTCGTTGAAGATCCTCAAATTTTGTCTAGAATACTCAATGAAAGGGAGAGTAAAAAATTTGTTGATAAGAAGAAACGACGGTTGATATCTCCGGTGGTTACGGCGGCGGTGACAACGTCGACTTCCTCGGAGTCGTCGGGCATGGCGATGGCGAATTCGGTGAAGATGGAGTTTGAGGAAGATGAGGTAACGGTTGGTAATAACATGATGTCATCGTCAACGGAGGTTGGTTTTGAAATTGATTATTTGCACCGTGTGCCACCGCGGGAGGTGGCTCCGGTGGGTGGTTGGTTGGGGCAGACGGAGTTTGGACAAATGGTTTATGGGCGTGATTGTGGAGTTTCACGGATGCCGGAGCTGTCTCCGGTGCCGGCGCCGATGACGTGGGGTGAGAATAGAAGTGATAGTAGTAGTAAAAAAGGGGGTGAGGGAAATTTCAATGAAATGGCGGCGGAGAATAGTAAGTTGCCACCTTATCCTTTTTCGTTGTTAGAAGGTGGCTTTTAG 1038 0.4143 MGMEQNNVIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRKKHVGGIGNGRNNNCYNNNNYFNEVKFEDLEEDEAMVTEIMKLKEEQRNLEEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNERESKKFVDKKKRRLISPVVTAAVTTSTSSESSGMAMANSVKMEFEEDEVTVGNNMMSSSTEVGFEIDYLHRVPPREVAPVGGWLGQTEFGQMVYGRDCGVSRMPELSPVPAPMTWGENRSDSSSKKGGEGNFNEMAAENSKLPPYPFSLLEGGF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2250 345 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Mtr6g2250 345 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g2250 345 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g2250 345 MobiDBLite consensus disorder prediction 300 345 - -
Mtr6g2250 345 Coils Coil 133 167 - -
Mtr6g2250 345 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 338 IPR027725 -
Mtr6g2250 345 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g2250 345 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g2250 345 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g2250 345 Gene3D - 4 102 IPR036388 -
Mtr6g2250 345 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr6g2250 345 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 10 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2250 Mtr-Chr6 40171509 40173342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2250 8 212 HSF AT3G24520 60.766 3.74e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr6g2250 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2250 K09419 - gmx:100794896 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2250 6 40171509 40173342 Mtr6g2250 6 40171509 40173342 ECH