Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2230 ATGACTCTACCTTCTTCCAATGGCAAGACTAATCTCTCTCTAGAGATTCCCACCATCAAGTTCACCAAACTCTTCATCAATGGAGAATTTGTTGATTCCCTTTCAGGAAAAGAGTTTGAGACAATAGATCCAAGAAGTGGAGAGGTGATAGCAAAAATTGCAGAGGGAACGAAAGAAGACATTGATGTTGCTGTAAAAGCGGCACGTGTCGCTTTCGATGATGGTCCATGGCCTCGTATGCCCGGTTTTGTAAGAGCAAAAATAATGCTGAAATGGGCAGACTTAATTGATCAAAACATAGAAGAAATAGCAGCATTAGATACAATAGATGCTGGAAAACTATACACTTTCTGCAAAGCTGTTGACATTCCTGGAGTAGCAAATATAATACGTTACTATGCCGGTGCTGCGGATAAAATTCACGGCAAGGTTTTAAAACCTGCTCGGGAGTTGCACGCATATACTTTGATGGAGCCAATCGGTGTCGTTGGACACATTATTCCTTGGAATTTTCCTAGTACTATGTTTGCTGCTAAGGTTGCTCCTGCTTTGGCTGCTGGTTGTACTATGGTTCTTAAGCCTGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCTCATCTTGCTAAGGAGGCTGGAATTCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGTGCAACTGCAGGAGCTGCAATAAGCTCACACATGGACATTGATAAGGTTAGTTTTACCGGTTCAACAGAAGTAGGACGCGAAATAATGGTATCTGCAGCTAGAAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGAAAATCACCCCTCTTAATTTTTGATGATGCTGATGTTAATAAAGCTGCTGAACTTGCTCTCCTTGGCATTTTATTTAATAAGGGAGAAATTTGTGTTGCGGGTTCTCGTGTGTTTGTTCAAGAAGGAATCTATGATGAATTTGAGAAGAAGTTGGTGGAGAAAGCAAAAGCTTGGGTTGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAAATTCTTTCCTACATTGAGCATGGAAAGAATGATGGCGCAACCCTTTTGACAGGTGGTAAAAAAATTGGAGACAAGGGTTACTACATTGAGCCTACAATTTTCTCAAATGTTAAGGAGGACATGCGTATAGCACAAGATGAAATATTTGGCCCTGTCATGGCACTCATGAAGTTCAAGACTATTGAGGAAGCAATCAAAAGTGCAAACAATACAAAATATGGCTTAGCAGCAGGAATTGTGACAAAGAATTTGGATATAGCAAACACTGTGTCAAGGTCCATTAGAGCAGGAATTATTTGGATTAATTGCTACTTTGCCTTTGGAAATGATATTCCTTATGGAGGTTACAAGATGAGTGGGTTTGGAAGAGATTTTGGATTGGAATCATTACATAAATATTTGCAAGTTAAATCTGTTGTAACTCCCATTTACAATTCTCCTTGGCTTTGA 1509 0.3983 MTLPSSNGKTNLSLEIPTIKFTKLFINGEFVDSLSGKEFETIDPRSGEVIAKIAEGTKEDIDVAVKAARVAFDDGPWPRMPGFVRAKIMLKWADLIDQNIEEIAALDTIDAGKLYTFCKAVDIPGVANIIRYYAGAADKIHGKVLKPARELHAYTLMEPIGVVGHIIPWNFPSTMFAAKVAPALAAGCTMVLKPAEQTPLSALFYAHLAKEAGIPDGVLNVVPGFGATAGAAISSHMDIDKVSFTGSTEVGREIMVSAARSNLKPVSLELGGKSPLLIFDDADVNKAAELALLGILFNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKNDGATLLTGGKKIGDKGYYIEPTIFSNVKEDMRIAQDEIFGPVMALMKFKTIEEAIKSANNTKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCYFAFGNDIPYGGYKMSGFGRDFGLESLHKYLQVKSVVTPIYNSPWL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2230 502 Pfam Aldehyde dehydrogenase family 31 492 IPR015590 GO:0016491
Mtr6g2230 502 SUPERFAMILY ALDH-like 16 498 IPR016161 GO:0016491
Mtr6g2230 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
Mtr6g2230 502 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 6 502 - -
Mtr6g2230 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 6 502 - -
Mtr6g2230 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491
Mtr6g2230 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491
Mtr6g2230 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2230 Mtr-Chr6 39805098 39815125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2230 7 502 Aldehyde Dehydrogenase Gene Family AT3G24503 73.347 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2230 K12355 - gmx:100783920 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3729 8 47757976 47761864 Mtr6g2230 6 39805098 39815125 PCT