Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2228 ATGTTTACGATGCCGACACGAACCGTAGGAACAATAAAACAAGATTGGGAACCCGTGGTTCTCCACAAAACCAAACCCAAAGCACAAGACCTCCGTAACCCAAAAGCAGTAAACCAAGCCCTCCGAACCGGAGCAGAAGTGTTAACAGTTAAAAAACCAACAGCCGGTTCGAACAAAAAAGCAACGGCCGGACCGGTTTTAAACGCGAGGAAACTAGATGAAGCGGCTGAACCGGCAGCGTTAGAGCGGGTTGGTGGAGAAGTGAGACACGCGATACAGAAAGCGCGTTTGGATAAGAAGATGAGTCAGGGTGATTTGGCGAAATTGATTAATGAAAGGGTTCAGGTTGTTCAGGAGTATGAGAATGGTAAAGCTGTTATTAATCAGGGTGTTTTGGGGAAAATGGAGAGGGTTTTGGGGGTTAAACTTAGGGGTAAAATTGGTAAATAA 450 0.4578 MFTMPTRTVGTIKQDWEPVVLHKTKPKAQDLRNPKAVNQALRTGAEVLTVKKPTAGSNKKATAGPVLNARKLDEAAEPAALERVGGEVRHAIQKARLDKKMSQGDLAKLINERVQVVQEYENGKAVINQGVLGKMERVLGVKLRGKIGK* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2228 149 Pfam Helix-turn-helix 92 143 IPR001387 -
Mtr6g2228 149 CDD HTH_XRE 91 143 IPR001387 -
Mtr6g2228 149 SMART mbf_short4 91 146 IPR001387 -
Mtr6g2228 149 ProSiteProfiles Cro/C1-type HTH domain profile. 92 146 IPR001387 -
Mtr6g2228 149 Pfam Multiprotein bridging factor 1 14 84 IPR013729 -
Mtr6g2228 149 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 4 148 - -
Mtr6g2228 149 Gene3D - 76 149 IPR010982 GO:0003677
Mtr6g2228 149 SUPERFAMILY lambda repressor-like DNA-binding domains 89 143 IPR010982 GO:0003677
Mtr6g2228 149 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2228 Mtr-Chr6 39789408 39792560 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Mtr6g2228 MBF1 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2228 K03627 - cpap:110818571 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2228 6 39789408 39792560 Mtr6g2228 6 39789408 39792560 ECH