Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2220 ATGGGGACTCGGTTTAAAGAAGATGAGAGAAACGAACGCGCGATTCGAACTCTTTTAAAGCTTGAACCGAATCGGAGATGTATTAACTGTAATAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTAAAATCAGTTTCAATGGCTAAATTTACTTCACAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAGATTTATTTTAAAGAATGGGATGCACAACGCAATTCTTTCCCTGACAGCAGTAATGTTAACAGGCTCCGAGAGTTTATTAAGCATGTTTATGAGGATAGGAGATTCACCGGAGATAGGACGTCTGACAAACCACCAAGAGGAAAGGCCGGTGACAAAGATGATTCCTATGAAAACAGGAGAGTTGAGGCATATCAGGGAGGATCTAAAAGCCCTCCATATGAAGACACACAGGAACGTCGTTATGGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAGTCCCGGCCGTCCTCCAGTTGTCAATGATTGGCGTCGTGAAGATCGTAGAGTATCAGATGGAGATTATAAGGTGGAAAGTCAATCTCCTGAGAGAGCCAGAGACCTGGGTTCTTCAAGCCCACCCGTTGTCCGACCCGTTAGAGATATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGACCCCCCAAACCAAACAGTGGAAGAGCTGCCGATGCCTCATCACTGACACAGAGAACTGCATCCTCTGGCAGCTTGGTATCCAGTAACGAAAGCCAAGTAGATATTAAACTTGAGACGGCGAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTGTTGCTCCAACAGTTCATGCCCAACAATCTAGTGTGCCTCAACCTGTTTTGCAGTCAGGAAATTCAAGTGATGACAATTGGGCCTCTTTTGATGTTGCTTCTGAGGCGAAAGCAAATCCAAGTACCTCAAATTTAAATCCACTTGAATCTGCACTGTCCCAATTGTCTGTGCCAGAATCTTTACCTTCTCATGCTTCAGGAGTCCAAGGACATGTTCCAACAGCAGCTCCTAGTTTTGGCAGTTTCTCAGCTTTCACACCCAGTGGTGCTTCGGTGCCATCTGTACCACCTCATAATAATGTAGGACAATGGGCCAGTGTGCAGCATCAGCAACCAACATTCCCTGCCGCTGCTAGTCAACAATTTCCACCATCAGTGGGTGGTGCTGTGAATAGTCAGCCATCGCATGTACCTTCTGTACCCACAGGACAGGGGCATCCGAATACACCAATGCCACATGCATACCATCATGCCTCAAAGCCTGCCAATGAGGCTTTTAACAGTGGAAGAACAGAACTTCCTGAAGATCTGTTCACTGTAAAACACCAGTACTTTCCTGCTCCAGTTCAAGGTTGGCAAATGGGTCCTCCGCAGGGCATTCCAATGCAATATAATAATGTGGCGCCTGTGTCAAGTTTTTCGCAGCCATCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAGCAAACCCCAGATCAAGCCCCAAGCTTTCCTTCCATGTCATCCTTGCATGGTGCGTTGCCTAATGTACCACCATCAATCCCGATGCACCCTCCAAGCCAGAGCAATCCATTGCATGCATGGAATCCACCCCTGCCTAATGTAGGAACCGTGCAGTCTTCAACCCTGGGTTATCCACCACATGCATGGACTCCATCCTTGCCATCCTTTCAAGGTTCCCTGCCTAATGTACCACCTTCAGGCATTACGCACCCTTCAAACCTGGGATATCCATCCCATGCCTGGACTCCAACCCCATCATCATCATTGGGACCTGGGTCATACATGGGGCAACAAATGGCAACTAACATACCAATGCCAAGGCAAGGAGTTGGGAATTTCGGAACTGAGGGAAACATGTTCGGTTTGTCAAATCCAAATCAGCAGCTTCCTGATAGGCCGTCAAGGACTCCCAACTCTAACCCCCTCCCTAAAGGAGGGAACCCATTCGGTTAA 2097 0.4654 MGTRFKEDERNERAIRTLLKLEPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRAKEIYFKEWDAQRNSFPDSSNVNRLREFIKHVYEDRRFTGDRTSDKPPRGKAGDKDDSYENRRVEAYQGGSKSPPYEDTQERRYGDRSSPGGRSPGYDQESRQYGDYKRSPGRPPVVNDWRREDRRVSDGDYKVESQSPERARDLGSSSPPVVRPVRDILGENVVPLRISGPPKPNSGRAADASSLTQRTASSGSLVSSNESQVDIKLETAKSLIDFDADPEPVAPTVHAQQSSVPQPVLQSGNSSDDNWASFDVASEAKANPSTSNLNPLESALSQLSVPESLPSHASGVQGHVPTAAPSFGSFSAFTPSGASVPSVPPHNNVGQWASVQHQQPTFPAAASQQFPPSVGGAVNSQPSHVPSVPTGQGHPNTPMPHAYHHASKPANEAFNSGRTELPEDLFTVKHQYFPAPVQGWQMGPPQGIPMQYNNVAPVSSFSQPSRSTNPFDVSSKQTPDQAPSFPSMSSLHGALPNVPPSIPMHPPSQSNPLHAWNPPLPNVGTVQSSTLGYPPHAWTPSLPSFQGSLPNVPPSGITHPSNLGYPSHAWTPTPSSSLGPGSYMGQQMATNIPMPRQGVGNFGTEGNMFGLSNPNQQLPDRPSRTPNSNPLPKGGNPFG* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2220 698 MobiDBLite consensus disorder prediction 123 286 - -
Mtr6g2220 698 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Mtr6g2220 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Mtr6g2220 698 CDD ArfGap_AGFG 12 122 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 514 555 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 514 550 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 657 698 - -
Mtr6g2220 698 PANTHER ARF GTPASE ACTIVATOR 598 698 - -
Mtr6g2220 698 PANTHER ARF GTPASE ACTIVATOR 1 579 - -
Mtr6g2220 698 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Mtr6g2220 698 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Mtr6g2220 698 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Mtr6g2220 698 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Mtr6g2220 698 MobiDBLite consensus disorder prediction 264 286 - -
Mtr6g2220 698 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Mtr6g2220 698 PANTHER ARFGAP/RECO-RELATED 1 579 IPR044820 GO:0005096
Mtr6g2220 698 PANTHER ARFGAP/RECO-RELATED 598 698 IPR044820 GO:0005096
Mtr6g2220 698 MobiDBLite consensus disorder prediction 665 691 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 303 334 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 123 147 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 424 453 - -
Mtr6g2220 698 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Mtr6g2220 698 MobiDBLite consensus disorder prediction 424 463 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 311 334 - -
Mtr6g2220 698 MobiDBLite consensus disorder prediction 199 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2220 Mtr-Chr6 39624486 39633508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2220 12 122 C2H2 Transcription Factor Family AT4G21160 32.258 3.45e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2220 - - mtr:MTR_6g086630 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2220 6 39624486 39633508 Mtr6g2220 6 39624486 39633508 ECH