Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2216 ATGACTGAAAAGAAAAAGGACTCGAAAAAAGTTTCTGGCCTCGGCAGTCAGTGTTCAAGGAAGCAACTTCGCAAGGGAGAAAACCCTATTCGATTTGTACCACCTGCTGATCCTCCTTCTGATTACGGACATTCAAACTCCTGGATTTGTAAAAACTCTGCTTGTAGAGCAGTTCTATCCAAAGACGACACATTCTGTAGAAGGTGCTCTTGCTGTATTTGCCATCTCTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCAGTGAATCTTCTCAAGGTGACTCATGTGGATTGTCTTGCCATATTGAATGTGCCCTTCATCATGAAAAAGTTGGAGTTGTTGATCATGGACAGCTGATGCAACTCGATGGTGGTTATTGTTGTGCCTCCTGCGGTAAAGTTACCGGGATACTTGGAAGCTGGAAGAAGCAGCTAAATATAGCGAAAGATGCTCGGCGTGTGGATGTACTATGCTATAGGATATATTTGAGCTTCAGGCTTCTGAATGGTACTTTGAGATTTAAAGAATTGCATGACATGGTACAAGAGGCAAAGGCTAAACTGGAGAAGGAAGTTGGTCCTGTTGACGGTGGTTCTTCCAAGATGGTACGCGGCATTGTCAGCAGGCTCCCTATTGCCAGTGATGTGCAGAAACTCTGTTCCCTTGCTATTGAGAAAGCTGATGAATGGTTGGCCACTGACGACAATCCAGAATCCAAAGAGGGTTCACTTCCTGCTGCCTGCAAGTTTGTGTTTGAAGAGGTGACAGCTAACTCCGTTAAGATCATTTTACTTGAAATGCCAAATGTAACTTCTGAGGACATTAAGGGATTCAAACTCTGGTATTACAAGACTAGGGGCGAATCACACACAGAAGAACCTGTTTGTGTGTTTCCAAAAGATCAGAGGAGGATTTTGATATCTAACCTCCAGCCATGCACAGAATATACTTTTCGGATTGTATCTTATACAGATATTGGCGACCATGGTCATTCTGAGGCTAAGTGTTTCACCAAAAGCGTTGAGATATTGGTAAAGAAACCGACTTCATCAATTGACATGAATGCTAAGGATGATACTGAAACTGGAGGGGGCAGTGAACCGGGCTCCAAACTGGAGATCGATCCCTCAATGACTTACCCCGGATTCAAGGTTCGAGACCTTGGAAAGATTTTGCACCTTGCTTGGGCTCAAGAACAAGGCTGCCTCGAGGGGTTTTGCCGCGCCGATACAAAAAATTGCTGTGGTCAAATTGAAACGATCAAGCCTAGCCATCCGGAAGAGCGATCGGTGCCTTTGGTTTCTCGTGATCTTGATTTGAATGTTGTTTCTGTGCCTGACTTGAACGAAGAACTCACTCCTCCTTTTGAGTCTTCTCGGGATGAAGACAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCAGCCTCTCATGATTTAGAGAAAAACCTAGCAAGACCACATGGTAGCGGTGGTTCCGAAACCTGGAGAACAAACGAAGAAGTTCCTGCTGTTGACTCCCGCATAGTCGTAGGTGCAAGTAGGAAAAGAGTAGCAAGCACAAACGAAGAAGCACATGATTGTGACAGCACCTTAATAAACGGTTCTCCTTTACATGCACCCGATGGTTCGTTCTCCTTAGATGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATGAAGAAAGAGTTTAGGCTGAAATTGCTTACATGGTTTAGTTTGAGGGCAACAGAACAAGAGCGTAGGGTGGTTAATACTTTCATTCAGACACTGATCGATGATCCGAGTAGTTTGGCAGGTCAACTTGTCGACTCATTTTCTGATATTATATCCAACAAGAGGGCAAGAAATGGATTCAATAACAAGGTTGTGGCATTAAATTAA 1920 0.438 MTEKKKDSKKVSGLGSQCSRKQLRKGENPIRFVPPADPPSDYGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCSESSQGDSCGLSCHIECALHHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGSWKKQLNIAKDARRVDVLCYRIYLSFRLLNGTLRFKELHDMVQEAKAKLEKEVGPVDGGSSKMVRGIVSRLPIASDVQKLCSLAIEKADEWLATDDNPESKEGSLPAACKFVFEEVTANSVKIILLEMPNVTSEDIKGFKLWYYKTRGESHTEEPVCVFPKDQRRILISNLQPCTEYTFRIVSYTDIGDHGHSEAKCFTKSVEILVKKPTSSIDMNAKDDTETGGGSEPGSKLEIDPSMTYPGFKVRDLGKILHLAWAQEQGCLEGFCRADTKNCCGQIETIKPSHPEERSVPLVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARPHGSGGSETWRTNEEVPAVDSRIVVGASRKRVASTNEEAHDCDSTLINGSPLHAPDGSFSLDENFEYCVKVIRWLECQGHMKKEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRARNGFNNKVVALN* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2216 639 Pfam Fibronectin type III domain 252 331 IPR003961 GO:0005515
Mtr6g2216 639 MobiDBLite consensus disorder prediction 487 506 - -
Mtr6g2216 639 SUPERFAMILY Fibronectin type III 253 340 IPR036116 GO:0005515
Mtr6g2216 639 PANTHER VIN3-LIKE PROTEIN 1 3 635 - -
Mtr6g2216 639 MobiDBLite consensus disorder prediction 354 377 - -
Mtr6g2216 639 CDD FN3 251 340 IPR003961 GO:0005515
Mtr6g2216 639 Pfam PHD - plant homeodomain finger protein 50 167 IPR032881 -
Mtr6g2216 639 PANTHER VIN3-LIKE PROTEIN 2-RELATED 3 635 IPR044514 GO:0010048|GO:0040029
Mtr6g2216 639 Gene3D Immunoglobulins 240 344 IPR013783 -
Mtr6g2216 639 MobiDBLite consensus disorder prediction 1 39 - -
Mtr6g2216 639 ProSiteProfiles Fibronectin type-III domain profile. 246 345 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2216 Mtr-Chr6 39575704 39583226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2216 46 630 PHD Gene Family AT3G24440 49.000 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2216 - - gsj:114418583 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2216 6 39575704 39583226 Mtr6g2216 6 39575704 39583226 ECH