Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2212 ATGTCTCGTTCGTTGGTTCAACCAATAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTGAAGAAACACGGCATGCGTTTCGAAATCGCTTGTTACCCTAACACTGTTCTTTCATGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGTTGCAGTCACATACGGTTTATACGAATGTTTCGAAAGGTGTTCTTGCTAAGTCTAAGGATTTGAATGCTGCGTTTGGTACTGATGATCATTCCAGTATTTGCTTAGAGATTTTGAAGAAGGGGGAACTTCAGGTTGCTGGTAAAGAGAGGGAGTCAATGCTGTCTAGTCAGTTCAGGGACATTGCCACCATTGTAATGCACAAGACTTTTAATCCTGAGACTAAGCGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTTGCTGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAACGGTGTCCATTGAGGGTACGCGCTGCTGCCCCTGAAGAGGAAGTACCCATCCTTTTGGAAAAGCTGAGCGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGGACAGCTGCTCAGCTATCTGTTGTTTTTGAATTGGAGCCTGGTCTGTATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCCCACTCTCTTTATGTGGATGGGGATACTCATGTGGATTACAATGATCATGAGGACATGCCTGCACCATTGCCTCAAAGAACTCCTGAATCTGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCGTCTGGACCTAAGCCTAATGAGGGACAACAACCAAAGCAAAATAAGTGCAACACATGTGATGCTTGTTTTGAAGATGCTAAGTTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACAAGGCAACTTCCTCCACTATCTGAAGAAGAGTGCACGGCGGATATGGAATTGTTTGAATCAAAATCTGATTTGAAGGATTATTCATTTTGA 1077 0.4299 MSRSLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSSICLEILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRVRAAAPEEEVPILLEKLSEWKATVISKEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDYNDHEDMPAPLPQRTPESVLELNDKLQKQTISSGPKPNEGQQPKQNKCNTCDACFEDAKLYREHHKSEWHKHNMKRKTRQLPPLSEEECTADMELFESKSDLKDYSF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2212 358 Gene3D - 100 172 IPR037188 -
Mtr6g2212 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Mtr6g2212 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Mtr6g2212 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Mtr6g2212 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Mtr6g2212 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Mtr6g2212 358 MobiDBLite consensus disorder prediction 317 337 - -
Mtr6g2212 358 Gene3D - 1 96 IPR036786 -
Mtr6g2212 358 PANTHER BNAANNG06530D PROTEIN 1 358 - -
Mtr6g2212 358 SUPERFAMILY beta-beta-alpha zinc fingers 294 344 IPR036236 -
Mtr6g2212 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Mtr6g2212 358 Gene3D - 174 251 - -
Mtr6g2212 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 358 IPR039100 -
Mtr6g2212 358 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2212 27 358 C2H2 Transcription Factor Family AT1G43860 57.391 2.73e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr6g2212 SBDS_C 2e-27 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2212 K14574 - gmx:100797497 621.698