Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2182 ATGGAGGAAAATCTACCTCCTGGTTTTAGGTTTCATCCAACAGATGAAGAACTCATTACACACTATCTTACAATGAAAATTTCTGATGCTTCCTTCACATCCAAAGCTGTTGCAGTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTTCCAGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTCTTCAGTGTAAGAGATAGAAAATATCCAACTGGACTTAGAACCAATCGAGCCACTGAATCAGGGTATTGGAAAACCACTGGAAAAGATAAGGAAATATTTCGTGGTGGAGTTTTGGTAGGGATGAAGAAAACCCTAGTGTTTTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGATTAGAAAACAAACACCATTTTCGAACTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCATAGCAACAAAAAAACCCCAACAAACATCATTTTCCCAACCAGAATCTCCATGTGACACAACCTCAATAGTGAATGAATTTGGTGATGTTGAGCTTCCAAATCTAAATGGTATTACAAATTCATCATCTTCATGTGGATTCACCAACATTATTCAAGGACAAACATTCAACACTCATGATGATCTTAACACAAATATGAATTTGACAATGAATTGGCCATCTTCAAGTCATGTTCCATCTCTACCATGGCCTTCTAACTTGCTTAATCCAAATAATATTTCAGTAAATTCATTACTTCTAAAAGCATTACAACTTAGGAATTATCAGCAACAAAGAGAAGTTGCAGCTACAAATATTCATTTTGCACCTTACATGCCTCAACAAGGAGTAATATCTCATCACCAACTTGGAACTGATCCAAGTAATAATTCAAATGATCTAAGTGCTTCTTCTTCAAAAGTTTTAGAGTGTATGCCACAGCATCAACAAGAGCAACCATTCAATTTGGACTCCATTTGGTGA 978 0.3722 MEENLPPGFRFHPTDEELITHYLTMKISDASFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSIATKKPQQTSFSQPESPCDTTSIVNEFGDVELPNLNGITNSSSSCGFTNIIQGQTFNTHDDLNTNMNLTMNWPSSSHVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQQQREVAATNIHFAPYMPQQGVISHHQLGTDPSNNSNDLSASSSKVLECMPQHQQEQPFNLDSIW* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2182 325 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Mtr6g2182 325 MobiDBLite consensus disorder prediction 284 304 - -
Mtr6g2182 325 PANTHER BNACNNG63190D PROTEIN 2 261 - -
Mtr6g2182 325 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Mtr6g2182 325 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Mtr6g2182 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 261 - -
Mtr6g2182 325 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2182 Mtr-Chr6 39014801 39017913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2182 1 325 NAC Transcription Factor Family AT3G18400 58.407 4.77e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr6g2182 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2182 - - gmx:100780030 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2182 6 39014801 39017913 Mtr6g2182 6 39014801 39017913 ECH