Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2170 ATGTCAGTACTGATGGTAACGAGTTTAGGCGACATGGTCATTGATCTACACACCCAGAAATGTCCCTTAACCTGCAAAAACTTCTTGAAGCTTTGCAAGATTAAGTATTACAATGGGTGCTTATTTCATACTGTTCTAAAGGATTTCACTGCTCAGACTGGTGATCCTACTGGAACTGGCACTGCTGGTGATTCTATCTACAAGTTTCTTTATGGGGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATTTGAATGCTTCACAGTTCTATATAACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATTAATGAGGCTTATGCCGATGGAAAGGGAAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAAGATCCTTTTGATGATCCTCCTCAGCTACCTGAGTTCATTCCTGAAGCTTCACCAGACGGAAAACCTAAAGATGAGGTTGATGATGAAGTCCGACTTGAAGATGATTGGGTGCCTATGGATGAACAATTAAACCCAGGAGAACTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCAGATGCTGAGGTTAAACCTCCGGATAATGTACTTTTTGTCTGTAAATTGAATCCGGTTACTGAGGATGAGGACCTGCACACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATTCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTTATAGAGTTCGAAGACAAATTGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTGCCAAACTCTGGTCACAATACATGCGGAAAGATAATAAGGGTGGTGGTTGCTTCAAATGTGGTTCCACTGATCATATTGCTAGGGATTGCACCGGAGATGGTACAATGAAACAAAGCACAAAATTTATCATGAAGGACAATAATGGCCAACGGGGTGGAGATAAAGCAAGATACGAAATGGTTTTTGATGGAGATAGCATAGAAAGTCCAAAGAGAGAAACGAAACACCAGCGATATGAAAGGGGTGACCGATATGATAAAAAAGGTAGGAAGGAAAATTTTAAAGATGATAGTCGTAGAGGTCGTAGGGATCAGGAGATGGCAGGCTCGAATAACAGAGATAGGTATCACGATAGAAGCAGAGGGCTTGAAGGAAACGGAGATGATAAAGCGGGACTGGAAAGAGGTGCAAGAGATCCAGATTTTCATGCCGACAAGAAAGACATAGAAAGGCATATGGGAAGAAGACATAGAGACGATGACTACCGACGGAAAGATGAGCTAGACTCGAGAAAAAGAGACTTGGATGATAAATACACAGAAAGACGGGCTAGTCGAGATGATAGGAGAAAAACAGATGACAACCATTTGGATAGGAGGGACGACCGAAATTATAGGAAGAGAACTGAAGACAGTGGAAGGCAAGATGTGAAGGTTGATTCTGGAAGAAGAAAACGAAGCCCAGATGGTGATGATTACAAACGTAGAAGGAATGATGAGGATTACAGAGAAGATGTGAAGATTGATTCCGGACGAAGAAAACGAAGCCCGGATGATGGGGATTACAAGCGTGGAAGGGACCATGAGGATTACAGACATAGGAGGGAAGGTCGTGAACATAGGACATGA 1815 0.4176 MSVLMVTSLGDMVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVLKDFTAQTGDPTGTGTAGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPFDDPPQLPEFIPEASPDGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDGTMKQSTKFIMKDNNGQRGGDKARYEMVFDGDSIESPKRETKHQRYERGDRYDKKGRKENFKDDSRRGRRDQEMAGSNNRDRYHDRSRGLEGNGDDKAGLERGARDPDFHADKKDIERHMGRRHRDDDYRRKDELDSRKRDLDDKYTERRASRDDRRKTDDNHLDRRDDRNYRKRTEDSGRQDVKVDSGRRKRSPDGDDYKRRRNDEDYREDVKIDSGRRKRSPDDGDYKRGRDHEDYRHRREGREHRT* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2170 604 Gene3D - 331 402 - -
Mtr6g2170 604 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Mtr6g2170 604 Gene3D - 182 324 IPR012677 -
Mtr6g2170 604 ProSiteProfiles Zinc finger CCHC-type profile. 339 352 IPR001878 GO:0003676|GO:0008270
Mtr6g2170 604 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 159 IPR002130 GO:0000413|GO:0003755
Mtr6g2170 604 CDD cyclophilin_RRM 4 169 IPR035538 -
Mtr6g2170 604 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 518 IPR035542 -
Mtr6g2170 604 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Mtr6g2170 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Mtr6g2170 604 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Mtr6g2170 604 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Mtr6g2170 604 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Mtr6g2170 604 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Mtr6g2170 604 MobiDBLite consensus disorder prediction 384 604 - -
Mtr6g2170 604 CDD RRM_PPIL4 240 322 - -
Mtr6g2170 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Mtr6g2170 604 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Mtr6g2170 604 Pfam Zinc knuckle 338 353 IPR001878 GO:0003676|GO:0008270
Mtr6g2170 604 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Mtr6g2170 604 Gene3D - 1 172 IPR029000 -
Mtr6g2170 604 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2170 Mtr-Chr6 38839096 38846869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2170 7 166 U-box Gene Family AT5G67530 39.375 6.86e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2170 K12735 - gmx:100776900 924.85