LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g2170	ATGTCAGTACTGATGGTAACGAGTTTAGGCGACATGGTCATTGATCTACACACCCAGAAATGTCCCTTAACCTGCAAAAACTTCTTGAAGCTTTGCAAGATTAAGTATTACAATGGGTGCTTATTTCATACTGTTCTAAAGGATTTCACTGCTCAGACTGGTGATCCTACTGGAACTGGCACTGCTGGTGATTCTATCTACAAGTTTCTTTATGGGGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATTTGAATGCTTCACAGTTCTATATAACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATTAATGAGGCTTATGCCGATGGAAAGGGAAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAAGATCCTTTTGATGATCCTCCTCAGCTACCTGAGTTCATTCCTGAAGCTTCACCAGACGGAAAACCTAAAGATGAGGTTGATGATGAAGTCCGACTTGAAGATGATTGGGTGCCTATGGATGAACAATTAAACCCAGGAGAACTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCAGATGCTGAGGTTAAACCTCCGGATAATGTACTTTTTGTCTGTAAATTGAATCCGGTTACTGAGGATGAGGACCTGCACACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATTCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTTATAGAGTTCGAAGACAAATTGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTGCCAAACTCTGGTCACAATACATGCGGAAAGATAATAAGGGTGGTGGTTGCTTCAAATGTGGTTCCACTGATCATATTGCTAGGGATTGCACCGGAGATGGTACAATGAAACAAAGCACAAAATTTATCATGAAGGACAATAATGGCCAACGGGGTGGAGATAAAGCAAGATACGAAATGGTTTTTGATGGAGATAGCATAGAAAGTCCAAAGAGAGAAACGAAACACCAGCGATATGAAAGGGGTGACCGATATGATAAAAAAGGTAGGAAGGAAAATTTTAAAGATGATAGTCGTAGAGGTCGTAGGGATCAGGAGATGGCAGGCTCGAATAACAGAGATAGGTATCACGATAGAAGCAGAGGGCTTGAAGGAAACGGAGATGATAAAGCGGGACTGGAAAGAGGTGCAAGAGATCCAGATTTTCATGCCGACAAGAAAGACATAGAAAGGCATATGGGAAGAAGACATAGAGACGATGACTACCGACGGAAAGATGAGCTAGACTCGAGAAAAAGAGACTTGGATGATAAATACACAGAAAGACGGGCTAGTCGAGATGATAGGAGAAAAACAGATGACAACCATTTGGATAGGAGGGACGACCGAAATTATAGGAAGAGAACTGAAGACAGTGGAAGGCAAGATGTGAAGGTTGATTCTGGAAGAAGAAAACGAAGCCCAGATGGTGATGATTACAAACGTAGAAGGAATGATGAGGATTACAGAGAAGATGTGAAGATTGATTCCGGACGAAGAAAACGAAGCCCGGATGATGGGGATTACAAGCGTGGAAGGGACCATGAGGATTACAGACATAGGAGGGAAGGTCGTGAACATAGGACATGA	1815	0.4176	MSVLMVTSLGDMVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVLKDFTAQTGDPTGTGTAGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPFDDPPQLPEFIPEASPDGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDGTMKQSTKFIMKDNNGQRGGDKARYEMVFDGDSIESPKRETKHQRYERGDRYDKKGRKENFKDDSRRGRRDQEMAGSNNRDRYHDRSRGLEGNGDDKAGLERGARDPDFHADKKDIERHMGRRHRDDDYRRKDELDSRKRDLDDKYTERRASRDDRRKTDDNHLDRRDDRNYRKRTEDSGRQDVKVDSGRRKRSPDGDDYKRRRNDEDYREDVKIDSGRRKRSPDDGDYKRGRDHEDYRHRREGREHRT*	605

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g2170	604	Gene3D	-	331	402	-	-
	Mtr6g2170	604	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	7	161	IPR002130	GO:0000413\|GO:0003755
	Mtr6g2170	604	Gene3D	-	182	324	IPR012677	-
	Mtr6g2170	604	ProSiteProfiles	Zinc finger CCHC-type profile.	339	352	IPR001878	GO:0003676\|GO:0008270
	Mtr6g2170	604	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	3	159	IPR002130	GO:0000413\|GO:0003755
	Mtr6g2170	604	CDD	cyclophilin_RRM	4	169	IPR035538	-
	Mtr6g2170	604	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4	1	518	IPR035542	-
	Mtr6g2170	604	SUPERFAMILY	RNA-binding domain, RBD	229	331	IPR035979	GO:0003676
	Mtr6g2170	604	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	245	315	IPR000504	GO:0003723
	Mtr6g2170	604	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	16	31	IPR002130	GO:0000413\|GO:0003755

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g2170	Mtr-Chr6	38839096	38846869	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g2170	7	166	U-box Gene Family	AT5G67530	39.375	6.86e-30	122

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g2170	K12735		-	gmx:100776900	924.85

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