Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2169 ATGGCTGAATTCACAGAAAATTTTCAAAACATTATTAGACCTTCTTTGCCTTTTCTTGATTCTGATCAAAGCATGGAACTATTGAATCAATTCATGGAGAATTCAAACATGAACATGATGCATAATTTGATGCCTTTTTCTTGTGACAGCATCTTGGAACATCATCAACAAGAACATGTGTTTCCAAGAAACTTGGAAGAGAATTTTCATGGTCTTGTCCATCATGTCAATAATCAAAATCACAATGCAGTTCAACTTTCACTTCCAACAATTTTTCAAGAAGAAAATAAAGTTCATCATGAAGGTAAAAAGAGAAAAATGATGGATTTTCAAGAGACTAGTTCTGGAAATTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAAACCAAACTTAGTGGTGGAAGAGGAAAAAGAGTGAAAAGTTATGAAACAGAAGAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTGAAGTGCTTGCAAAATATTGTACCAGGATGTTATAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAGTTTCTTTCTTTGAAGCTTACTGCAGCAAGTACTTATTATGACTTCAATTCAGAGGCAGATGATCTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAGTTAGCAAGGTATAAGAGAGATGGGTATGGAGGAATTTCTTGCTTTCAACCAACTTGGCCACTTTGA 819 0.3614 MAEFTENFQNIIRPSLPFLDSDQSMELLNQFMENSNMNMMHNLMPFSCDSILEHHQQEHVFPRNLEENFHGLVHHVNNQNHNAVQLSLPTIFQEENKVHHEGKKRKMMDFQETSSGNSTPAVSESGSKTKLSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSEADDLETMQRARASEAKELARYKRDGYGGISCFQPTWPL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2169 272 Coils Coil 238 258 - -
Mtr6g2169 272 MobiDBLite consensus disorder prediction 111 130 - -
Mtr6g2169 272 SMART finulus 167 217 IPR011598 GO:0046983
Mtr6g2169 272 PANTHER TRANSCRIPTION FACTOR BEE 1 2 271 - -
Mtr6g2169 272 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Mtr6g2169 272 Gene3D - 161 223 IPR036638 GO:0046983
Mtr6g2169 272 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 271 IPR024097 GO:0006355
Mtr6g2169 272 MobiDBLite consensus disorder prediction 110 145 - -
Mtr6g2169 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983
Mtr6g2169 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 228 IPR036638 GO:0046983
Mtr6g2169 272 CDD bHLH_AtBPE_like 151 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2169 Mtr-Chr6 38830686 38833054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2169 38 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 51.765 3.12e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr6g2169 HLH 6.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2169 - - gmx:100806942 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2169 6 38830686 38833054 Mtr6g2169 6 38830686 38833054 ECH