Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2163 ATGGCGACGCCGTTAATTCCGCAACAGCAGCACTTAGACGGCGGAGGAGGAGTGGCGGTTCTGACGACTCTTGTTCCTCCTTCTTCTTCCAATGGTGGTGGTGGATTCAACCGTTCCTCTTTAACGGAATCGCCAATTTTGATTTTCTCGTTCTTTCAAAAAGCGATTGGGAATGAGCTTGATGCGTTGCATCGATTAGCTTTGGATTTTGCTACTGGAAATTGTTTTGATATTGGACCGTTATCGGAACGGTATCATTTTCTTAGATCGATGTATAGACACCATTCCAATGCTGAAGACGAGGTGATTTTTCCAGCTCTAGATAGGCGTGTAAAGAACGTAGCACAGACATATTCTCTTGAACACAAGGGGGAAAGCAACCTCTTTGACCATTTATTTGAGCTTTTAAACTCTTCCGGTGACAATGATGAAAGTTTCCGAAGGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACATCTGTTAGCCAACACATGGCTAAGGAGCAGCAGCAAGTTTTTCCGCTGCTTATTGAGAAGTTCTCCGTGGAGGAGCAAGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCAGTGAATATGATGGCAGAATTTCTGCCATGGCTTTCAACATCAATATCACCTGATGAATCTCAGGATTTGCGGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGCGAAGTAGTGCTAAGACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCAATGCAGTCCTAGTCCTTTAGCCCATCAGAATGGGAAAGCAACATGTGCATGTGAGTCCACTGTATGTGGGAAAAGAAAATATTCTGCATCTCTTCTAGAAGTTCCGGATACAATGGGTTCACATCCGATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAAAGAGTTAAATGAGATAGCAGCAGAGACCAGAAAGATACAACACTCTGGAGATTATACTAATCTGTCTGCTTTTAATGAAAGGTTGCAATTCATCGCCGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCAGTAGATGGGGATTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAACGACTTCCGATCTTTGATTGAAAGAATTGTAAGTGAAGAAGCAACATCTAGTTCAGAAGTTGAACTTTATTCCATGTTGTGCTCACAAGCTGATCATATAATGGAAACCATACAGAAGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCCTCCAAAGGCAACGTGAACTAGTGTATGAAAGCTTGTGTATGATGCCTCTGAAATTGATTGAGCGTGTCCTACCATGGTTTGTTGGATCACTAACCGAAGATGAAGCAGAGATATTTCTGAAAAACATACAATCGGCAGCTCCAGCAATGGATTCTGCTTTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCGGTGCTTGTCTTCAAGTGCATCACGTTTCTGTCCTGCTAAAAAAATAGTCCGGTCTTCCTGTGCTTGTGCTTCTGCATTGTCTGGTAAAGATTGCTCAGTATTAGCTGAATCAGATGGGACCCAAAGATCAGTCAAGCGAAGCATATTAGAGTTGCAAAAAAATGGAGATGTCTCAAAAACACCAGAAAATGAACCGGCCCTGAAACCATGTTGTGGTGGCCGGTCTTGTTGTGTGCCAGCGTTAGGGGTCAACAGTAACAATTTGGGGCTGAGTTCACTTTCTGCAGCCAAGTCCTTACGAAACTTCACTTCTTCCGCCCCATCTATTAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCATAGATTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGCGATGAAGCAACTATCCGGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTTTATACAGAGCTCATAGTAATGCTGAAGACGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCATACACGCTTGATCATAAGGCAGAAGAAAAGTTATTTGAAGATATTTCTTGTGTTCTTTCTGAGCTCTCTGTCCTTCATGAAGCATTGCAGAGTACCCATTTGTCAGAGGATTTAAGTGAACCTAATTCGGGAATATCTGATGCTAATGATAGTGATGATATCAGAAAGTATAATGAGCTTGCAACTAAGCTACAAGGGATGTGTAAATCTATACGAGTGACACTGGATCAGCATATTTTCAGGGAAGAGCTCGAACTCTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGGGCCGAAGTTCTCCAGTCAATGTTACCGTGGGTAACTTCTGCACTTACACAAGATGAACAGAACCAAATGATGGACACATGGAAACAAGCAACTAAGAACACAATGTTCAACGAATGGCTAAATGAAAGCTTGATAGAGAGTCCAGGATCTACATCACAGACAGAAACATCAGAACATAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATGAAAATGAAATTGTGTCCGAAATCCGGAAGGTTTATCGTGACTCAACCCTTGATCCAAGAAGAAAGGCATACCTTGTGCAGAATCTCATGACAAGTCGCTGGATAGCCGCCCAACAGAAGTTACCTAACTCTCAATCTGGGGAATCATCTAATAAACAAATAGAAGGTTGCGCACCTTCATTTCGGGACCCAGAGAAAAAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAAGTTCGAGCTGCTTGTTGTGAGAAGTTATTTACATGCAGATTTTGTCATGACAACAATTCAACTGATCACTCAATGGATAGAAAAGCAACAACGGAAATGATGTGTATGGCCTGCCTGACTATACAGCCAGTTGGACCGATATGCATGACGCCTTCATGTAATGGACTTTCAATGGCAAAGTACTACTGTAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTACCATTGCCCATTCTGCAACATATGCCGTGTTGGACAAGGGCTTGGCATTGATTACTTTCATTGTATGAAATGCAATTGTTGTGTGGGGATCAAATCAGTGTCTCACAAGTGCCGGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGTTGTGACGACTTGTTCACATCAAGTGCAACGGTCAGAGCTCTAGTTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCCTACGCTTGCAGTCATTACACATGCCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTCGGTATGCTTGATGCATTGCTGGCTGCTGAGCAGCTTCCTGAAGAGTACAAGGACCGCACTCAGGACATACTTTGTCATGACTGCGATCGAAAAGGAACTTCACAATTCCACTGGTTATATCATAAATGTGGATTTTGTGGCTCATACAATACCCGGGTGATCAAAAGCGAGACAACAAATTCCAGCTGCCCTTAA 3705 0.4194 MATPLIPQQQHLDGGGGVAVLTTLVPPSSSNGGGGFNRSSLTESPILIFSFFQKAIGNELDALHRLALDFATGNCFDIGPLSERYHFLRSMYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKGESNLFDHLFELLNSSGDNDESFRRELASCTGALQTSVSQHMAKEQQQVFPLLIEKFSVEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSAKTVENCVDHSQVQCSPSPLAHQNGKATCACESTVCGKRKYSASLLEVPDTMGSHPIDEILLWHNAIKKELNEIAAETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHAEEESQFNDFRSLIERIVSEEATSSSEVELYSMLCSQADHIMETIQKHFHNEEVQVLPLARKHFSLQRQRELVYESLCMMPLKLIERVLPWFVGSLTEDEAEIFLKNIQSAAPAMDSALVTLFSGWACKARKNGRCLSSSASRFCPAKKIVRSSCACASALSGKDCSVLAESDGTQRSVKRSILELQKNGDVSKTPENEPALKPCCGGRSCCVPALGVNSNNLGLSSLSAAKSLRNFTSSAPSINSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRIDLEYLDVESGKLCDGDEATIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCVLSELSVLHEALQSTHLSEDLSEPNSGISDANDSDDIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNQMMDTWKQATKNTMFNEWLNESLIESPGSTSQTETSEHSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNENEIVSEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPNSQSGESSNKQIEGCAPSFRDPEKKVFGCEHYKRNCKVRAACCEKLFTCRFCHDNNSTDHSMDRKATTEMMCMACLTIQPVGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCREKGLEMNCPICCDDLFTSSATVRALVCGHYMHSSCFQAYACSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYKDRTQDILCHDCDRKGTSQFHWLYHKCGFCGSYNTRVIKSETTNSSCP* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2163 1234 SMART ring_2 1118 1159 IPR001841 -
Mtr6g2163 1234 CDD Hr-like 305 434 - -
Mtr6g2163 1234 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Mtr6g2163 1234 Pfam Hemerythrin HHE cation binding domain 57 176 IPR012312 -
Mtr6g2163 1234 Pfam Hemerythrin HHE cation binding domain 642 805 IPR012312 -
Mtr6g2163 1234 PANTHER CHY ZINC FINGER PROTEIN 21 1234 - -
Mtr6g2163 1234 Gene3D - 1188 1231 - -
Mtr6g2163 1234 CDD RING-H2_Pirh2 1117 1160 - -
Mtr6g2163 1234 ProSiteProfiles Zinc finger CTCHY-type profile. 1054 1117 IPR017921 -
Mtr6g2163 1234 ProSiteProfiles Zinc finger RING-type profile. 1118 1160 IPR001841 -
Mtr6g2163 1234 SUPERFAMILY CHY zinc finger-like 981 1045 IPR037274 GO:0008270
Mtr6g2163 1234 SUPERFAMILY Zinc hairpin stack 1055 1110 IPR037275 -
Mtr6g2163 1234 Pfam Zinc-ribbon 1165 1222 IPR039512 -
Mtr6g2163 1234 Gene3D nmb1532 protein domain like 638 877 - -
Mtr6g2163 1234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1162 IPR013083 -
Mtr6g2163 1234 Gene3D nmb1532 protein domain like 305 453 - -
Mtr6g2163 1234 Gene3D nmb1532 protein domain like 44 194 - -
Mtr6g2163 1234 CDD Hr-like 644 804 - -
Mtr6g2163 1234 MobiDBLite consensus disorder prediction 874 893 - -
Mtr6g2163 1234 Pfam CHY zinc finger 988 1064 IPR008913 GO:0008270
Mtr6g2163 1234 CDD Hr-like 48 174 - -
Mtr6g2163 1234 SUPERFAMILY RING/U-box 1116 1163 - -
Mtr6g2163 1234 Pfam Ring finger domain 1117 1159 IPR001841 -
Mtr6g2163 1234 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 1234 - -
Mtr6g2163 1234 ProSiteProfiles Zinc finger CHY-type profile. 981 1051 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2163 Mtr-Chr6 38715261 38725039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2163 1 1233 C2H2 Transcription Factor Family AT3G18290 66.296 0.0 1670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2163 K16276 - gmx:100791354 2097.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2163 6 38715261 38725039 Mtr6g2163 6 38715261 38725039 ECH