Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2148 ATGCCATACAAAAACCTAGTCACGATTTATGGTTATGCCACTCATCAAAAGGAATCCATTCTAGTACAAGAATACGTGTCCAATGGGACTCTTGCTGCTCATATTCAAGGCCGAATATCAGATAGCGGAACATCATTAACTTGGCTTAACAGATTGGATATTGCAATTGATATAGCAAATGCATTGGAATATCTTCACTATAACGGCATTGTGCACCGTAATGTAAAGTCTCCTAATATTTTCCTTGATATAAACTTTTGTGCTAAAGTTGGTAACTTATATTTGTCAAAGAAACTTGATATTGGATCAACCCATGCTACAAGAGACTTAATCGGAACAAGTGGTTATGTAGACCCAGAACTTGTGTCAAAAGGCTTACTTGGTGTCCAAAATGATGTTTATAGCTTTGGGGTGGTATTGTGTGAACTTTTGTCATCTATGCTTGCAGAATATTATATTCAGAATGAAGAAGAAAATCTAGCAACCATTTTATGCACAAAACTTGAAAACCAAACTTTGGTTGAGCTTATGGATCTAAGACTTGGCTTCAAATCAGACATTAAGATCACCAAGATGATGACCGCTACAGCTGAGCTTGCATTTTGGTGTTTGAAATGTCCACAAGAATTAAGGCCTAACATGGAACAAGTGCTAGAGACTCTCCATGGCATAAAGCAAGGGAGATATGAGATAAACCCAATAAAAGCTTTCAAAATCTTCCACCATGCCGAACTTGAAGAAGCTACTAACCATTTTGACACTTTTCTGGGATCTGGAGGGTTCGGCAGAGTCTATTATGGAAAACTTAAAGACGGTAGAGAAGTTGCAATAAAACGCTTCCACGAAGAGACAGAAAAAACCATTAATCAGTTCATGAAAGAAATTGAGATCTTAAGTCACCTGCATCATCAAAATCTGGTTTCACTTTATGGTTGCAGTTCTCGTCATAGCAACAAGCACATGCTTGTGTACGAGTACATCTCTAATGGAACTCTTACACAACATCTTCACGGATCTTCATTTAGTAAACTATCATGGCTTACTAGATTGAATATTGCCATTGAAACTGCGAATGCCTTGGTATTTCTTCACGACTCAGGTATCATCCATCGTGACATAAAAGGAAGCAATATTCTGCTGGATGAAAGTTTTGCTGTTAAAGTTGCAGATTTTGGTCTCTCGCGGTTTCTTCCTGACTATGTGACTCATGTTTCAACTCTTCCGGTAGGAACTCGTGCTTACATTGATCCAGATTACTATGACACTGGAAGGGTAAGTGAGAAAAGCGATGTCTATAGTTTTGGAGTGATCTTATTCGAGCTTATATCATCGAAACCGGCAAGTTTAATGCAAGGCACGGAACATGTCACTCTTGCTCAATTTGCAATGAGTAAAATCTTAAACAAGGAATTACAGATGCTAGTGGATCAAAGTCTTCAAATTTCTTTTAATAAAAATGTAGTCGAAATGATAACAACAGTGACTGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAACTCAGGCCAACCATGAAACAGGTTTTAGAGACTCTACAGGGCATACGCAAAGGGAAATGGGGATTCAACCAAATAACATAA 1602 0.382 MPYKNLVTIYGYATHQKESILVQEYVSNGTLAAHIQGRISDSGTSLTWLNRLDIAIDIANALEYLHYNGIVHRNVKSPNIFLDINFCAKVGNLYLSKKLDIGSTHATRDLIGTSGYVDPELVSKGLLGVQNDVYSFGVVLCELLSSMLAEYYIQNEEENLATILCTKLENQTLVELMDLRLGFKSDIKITKMMTATAELAFWCLKCPQELRPNMEQVLETLHGIKQGRYEINPIKAFKIFHHAELEEATNHFDTFLGSGGFGRVYYGKLKDGREVAIKRFHEETEKTINQFMKEIEILSHLHHQNLVSLYGCSSRHSNKHMLVYEYISNGTLTQHLHGSSFSKLSWLTRLNIAIETANALVFLHDSGIIHRDIKGSNILLDESFAVKVADFGLSRFLPDYVTHVSTLPVGTRAYIDPDYYDTGRVSEKSDVYSFGVILFELISSKPASLMQGTEHVTLAQFAMSKILNKELQMLVDQSLQISFNKNVVEMITTVTELAFQCVQCPKELRPTMKQVLETLQGIRKGKWGFNQIT* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2148 533 Pfam Protein tyrosine and serine/threonine kinase 252 519 IPR001245 GO:0004672|GO:0006468
Mtr6g2148 533 Gene3D Transferase(Phosphotransferase) domain 1 327 528 - -
Mtr6g2148 533 Pfam Protein kinase domain 4 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2148 533 Gene3D Phosphorylase Kinase; domain 1 229 326 - -
Mtr6g2148 533 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 533 - -
Mtr6g2148 533 SUPERFAMILY Protein kinase-like (PK-like) 233 523 IPR011009 -
Mtr6g2148 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Mtr6g2148 533 ProSiteProfiles Protein kinase domain profile. 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2148 533 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 533 IPR044652 -
Mtr6g2148 533 SMART serkin_6 250 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2148 533 Gene3D Transferase(Phosphotransferase) domain 1 26 228 - -
Mtr6g2148 533 ProSiteProfiles Protein kinase domain profile. 250 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2148 533 ProSitePatterns Protein kinases ATP-binding region signature. 256 278 IPR017441 GO:0005524
Mtr6g2148 533 SUPERFAMILY Protein kinase-like (PK-like) 4 230 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2148 Mtr-Chr6 38363574 38366026 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2148 239 523 Receptor kinase-like Gene Family AT1G25390 55.326 1.50e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Mtr6g2148 PK_Tyr_Ser-Thr 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2148 - - gmx:102666805 796.193