Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2142 ATGCCGATTTTCTCTTTTTTGTGTCACTGTTTTTCCCCTGATGGAAATGGAAAGAAAAACAACCCTTCATTAACAAGGGGTTTTGAGGAGAAATGTAGCAATTTCGGGGCTGTGAGTTCTGAGAAGGCAATCAACAATGATCAAATGGTGTCTGTAGATTCTAAGGTTACAAGCAAATGTGATGAGTCAGTTCCGGTGAATGTGATTTCTGAGTTACCAAGTAGTCACGGTGCTGAAGCATTGATGATTGATTCTGAGGTCCAGAACAATCAATGCAACATTACTGAGAGTGAGATATTCAAGTATTCTGAACTTGAAGAAGCTACCAGTAACTTTGACAATAGTAGAATACTTGGGAAGGGAGGCTATGGAACAGTTTACTCTGGAACACTTAAAGATGGGCGTCTTGTTGCAATAAAGCGCTTACATAAAGACAAGTTCAAGATGTTAAGGTTACATGATAACAAGCTTGAGGAGGAAACATTAAGAAAGTTCATCAATGAAGTTTCAATGTTAACTCGCATGAGGCACGCAAATCTTGTCCAACTTTATGGTTGCACCTCTCCTCAGACACGTGAGCTACTTCTCGTGCAAGAATACGTTCCGAATGGAACTGTGTCTTGTCGTCTTCATAAACACACGTTCCCGTGGCCTGCTCGATTAAACGTCGCATTACAAACTGCAAGTGCATTGGCTTATCTTCATGCTTCCAATGTTATCCACCGTGATGTGAAAACTAGTAATATTCTACTTGACAAGAGTTTGAATGCCAAGGTAGCAGACTTTGGATTGTCGCGCCTTGTGCCAAACGGCGCCACTCATGTTACGACCGATCCTGCTGGAACTCCTGGTTATATTGATCCAGAGTATTACGAACATTGTCATCTTTCGGATAAAAGCGATGTTTACAGCTTCGGAGTGATATTGGTTGAGTTGATATCCTCTTTGCCAGCATTTAGTGAGGATGAAAAACTTTCTTTTCTTTCTGATTTCGCTATGGATAAAATCCTTAAGGGACAACTCGAAAAGCTTGTCGACCCGACTCTTGGATTTCAATCAGACAATTGGGTAAGTCAAACGGTAGGTGCAGTGGCAGAGTTAGCATTTGCCTGTTTACAACCTCAAAGAGACATGAGACCTTCCATGAGTGAGGTTTTCAATACTCTTGAAAGCATAAAAAGTGGAAGCTCTCAAAAAGCACTTAAATGGGGTTCAAATAATTGTTATAATGCTACCAAAGTTCACATTGTGTCGCGTTTGCCAGATGATTATTTTGAGAAGAAATAA 1287 0.4056 MPIFSFLCHCFSPDGNGKKNNPSLTRGFEEKCSNFGAVSSEKAINNDQMVSVDSKVTSKCDESVPVNVISELPSSHGAEALMIDSEVQNNQCNITESEIFKYSELEEATSNFDNSRILGKGGYGTVYSGTLKDGRLVAIKRLHKDKFKMLRLHDNKLEEETLRKFINEVSMLTRMRHANLVQLYGCTSPQTRELLLVQEYVPNGTVSCRLHKHTFPWPARLNVALQTASALAYLHASNVIHRDVKTSNILLDKSLNAKVADFGLSRLVPNGATHVTTDPAGTPGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAFSEDEKLSFLSDFAMDKILKGQLEKLVDPTLGFQSDNWVSQTVGAVAELAFACLQPQRDMRPSMSEVFNTLESIKSGSSQKALKWGSNNCYNATKVHIVSRLPDDYFEKK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2142 428 Gene3D Transferase(Phosphotransferase) domain 1 201 413 - -
Mtr6g2142 428 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Mtr6g2142 428 ProSiteProfiles Protein kinase domain profile. 112 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2142 428 Pfam Protein kinase domain 113 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2142 428 SMART serkin_6 112 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2142 428 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 86 398 - -
Mtr6g2142 428 Gene3D Phosphorylase Kinase; domain 1 82 200 - -
Mtr6g2142 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Mtr6g2142 428 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 86 398 IPR044652 -
Mtr6g2142 428 SUPERFAMILY Protein kinase-like (PK-like) 93 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2142 Mtr-Chr6 38275712 38278686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2142 99 394 Receptor kinase-like Gene Family AT1G25390 51.974 5.94e-102 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Mtr6g2142 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2142 - - mtr:MTR_6g082700 862.448