Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2135 ATGCCTGTTATCAAGTGGAGAAGACCCAGAACCAAATTAAGGCACCCCATTTCAGAAACTGATAAAACTTCACAACTTTCTTCCTTAATCCAATCCACTTCTTGCAAATCAAGTATCTCCACTCTCTTTTCCACTTTCTCCAACACCAACACATCCAATGAAACCACACATGACAGTAACCAAAACATAACAAAGAAAAACAACAAAAATAGTAAGAATGTCAATAACACCAATAGCAGCTTTTCTGCATCAACCTTCAGAAGTCTCGGTTGCACAGCCGGTACATCACAACAAGTGTCTGTACCGGCAGTGATTCGATCCTCTGCAGATTGGCAAGGGAAGAAGAACAGGAAAAAGAAGAACAGAAGGAACAAAACATGTCATGGTGTTGATGATGTGGATTTTCAGGATGTTTGGTGTGGACCTGGAACTGGATTCTTATCTGATGCTGCTGCTGATGTTTCTGTGGATTGTGTTGTTGCAAGAAAAAATGTTTCTTCAAGAGGAAAACTTGATAATGGTGAAAGGATACCACATAGAGAGCGTTCATCAATTTTTGGAAGGCGTAGTGTAAACCTAAATCAAGAAAGTTTGTCATTTTTGGAAGATAATTCTGATATTTTTACAACACGTCCTGGATTAGAGTCTTTTGGAAATAGTGGGTTTTATCGTAATGCTTCGAATGTTTCTTCTGATGGTATTGCTGAGATAATGAAATTTAAAGGAGCTAGACTAATGGGGGGACGATCACGTGATCAATTTAGAGACTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTGGGAGAGAGAATTGGTTATGTGAAAACTGGACTTAAAGAAGATGAGATGAAAAACAACATAAGGAAAATTAAGCTTTTGATTTCAAATGATTCATCAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAATCAGATGATGAATTGGGTAGATTACACTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGCCCAGTCTGTAAGCAAGAAGTTGTGGTTCGACCGTGA 1083 0.3804 MPVIKWRRPRTKLRHPISETDKTSQLSSLIQSTSCKSSISTLFSTFSNTNTSNETTHDSNQNITKKNNKNSKNVNNTNSSFSASTFRSLGCTAGTSQQVSVPAVIRSSADWQGKKNRKKKNRRNKTCHGVDDVDFQDVWCGPGTGFLSDAAADVSVDCVVARKNVSSRGKLDNGERIPHRERSSIFGRRSVNLNQESLSFLEDNSDIFTTRPGLESFGNSGFYRNASNVSSDGIAEIMKFKGARLMGGRSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMKNNIRKIKLLISNDSSKHQIDKKCTICQEEYESDDELGRLHCEHSYHFQCIKQWLVLKNFCPVCKQEVVVRP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2135 360 Pfam Ring finger domain 311 353 IPR001841 -
Mtr6g2135 360 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 357 - -
Mtr6g2135 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 358 IPR013083 -
Mtr6g2135 360 MobiDBLite consensus disorder prediction 47 79 - -
Mtr6g2135 360 SUPERFAMILY RING/U-box 311 358 - -
Mtr6g2135 360 SMART ring_2 312 352 IPR001841 -
Mtr6g2135 360 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Mtr6g2135 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 357 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2135 Mtr-Chr6 38179459 38184481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2135 84 267 C3H Transcription Factor Family AT1G73760 40.187 1.05e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2135 - - gmx:100818517 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3834 8 49009758 49013303 Mtr6g2135 6 38179459 38184481 ECH
Mtr6g2135 6 38179459 38184481 Mtr6g2135 6 38179459 38184481 ECH