Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2107 ATGGCAGAATTAGATCCGGCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTTCTTGGTGAAGGTACCTATGGTGTTGTTTACAAAGCCATTGATACCCAGACGGGACAGACGGTTGCTATTAAGAAGATTCGAATCGGAAAACAGAAAGAAGGGGTGAATTTTACTGCTCTTAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCCAATATAATTGAGTTGATTGATTGCTTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTCATAAGAGACCGAAATATTTTCCTTGCACCGGGTGATATAAAATCTTACCTTCAAATGACACTAAAAGGTCTTGCTCATTGTCACAAAAAATGGATATTGCATAGGGATATGAAACCAAATAATTTGTTGATCGGACCTAATGGACAACTGAAACTTGCAGATTTTGGTTTAGCGCGTATTTTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTATTTGCGCGGTGGTATAGAGCACCTGAGCTGTTATTTGGTACCAAGCAGTATGGCCCAGGAGTAGATGTTTGGGCTGCAGCCTGCATATTTGCCGAGCTTCTTCTTCGTCGACCTTTTTTGCAGGGATCAAGTGATATCGACCAATTAGGAAAGATTTTTGCTGCATTTGGAACTCCATCTCCTACTCAGTGGCCTGATATGGTATACCTTCCAGATTATGTTGAATATCAATTTGTGCCGGCCCCTCCTCTGCGGTCTTTATTTCCAATGGCAACTGATGATGCTTTAGACTTGTTGTCTAAAATGTTCACATATGACCCAAAAGATAGAATTTCAGTGCAACAAGCATTAGAACACAGATACTTCACTTGTCCTCCTCAACCAACAGACCCAGTTAAACTTCCAAGACCTGCCCCTAAGAAGGAAATTAAGCCATCAGATTTGAATCCTCCAGAGGGTCCCACTGTCTTGTCACCTCCAAGAAAGACTAGGAGAGTAATGCCAGGACGTGATGGACTTGAAGGTAATTCTTTGCAAGGAGATAGGGGGGACGATAATCATGGTAACCTCAAACAGACAGCTGGTGATAATACAGGGAAGAATGAGCCTGCACCAATGTCACTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAACAGACCAACAATTAACAGCGCTGACAGATCACATTTAAAAAGGAAATTAGATCTAGAATTCCAGTAA 1239 0.414 MAELDPAKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELKDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLAPGDIKSYLQMTLKGLAHCHKKWILHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPTQWPDMVYLPDYVEYQFVPAPPLRSLFPMATDDALDLLSKMFTYDPKDRISVQQALEHRYFTCPPQPTDPVKLPRPAPKKEIKPSDLNPPEGPTVLSPPRKTRRVMPGRDGLEGNSLQGDRGDDNHGNLKQTAGDNTGKNEPAPMSLDFSVFGLKPPNRPTINSADRSHLKRKLDLEFQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2107 412 SUPERFAMILY Protein kinase-like (PK-like) 10 298 IPR011009 -
Mtr6g2107 412 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Mtr6g2107 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Mtr6g2107 412 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2107 412 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Mtr6g2107 412 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2107 412 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Mtr6g2107 412 ProSitePatterns Protein kinases ATP-binding region signature. 20 49 IPR017441 GO:0005524
Mtr6g2107 412 MobiDBLite consensus disorder prediction 398 412 - -
Mtr6g2107 412 MobiDBLite consensus disorder prediction 294 412 - -
Mtr6g2107 412 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2107 412 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Mtr6g2107 412 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2107 Mtr-Chr6 37702118 37708381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2107 4 411 Core Cell Cycle Gene Families AT1G73690 74.265 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Mtr6g2107 Pkinase 3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2107 K02202 - gmx:100814263 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2107 6 37702118 37708381 Mtr6g2107 6 37702118 37708381 ECH
Mtr1g3879 1 50466474 50467703 Mtr6g2107 6 37702118 37708381 PCT