Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2104 ATGGCAGATATCGAGGAGGACATCCGTTCTTTACAGCTTGAGTCAGCAGACATAGCAGAAGACAGCAATGGAGTTGTAAGTCCAGATGATGGAAAAACAGAAGTTGAGGAATCTGCTAATACACAACAAGAAGTTGAGGAACATATTAATGCAGATGAAGATCCTAAGCAAGAGGTTCAAGAACAATCTATTAAGACTGAGATAAAAGATAAGGAAATTCCTCCGGTGCAAGATGAAGAAGATGAGGAGGATATATTATCTAAGAAAAGACATTTAAATGTTGTATTTATTGGTCATGTGGATGCTGGTAAGTCTACAACAGGAGGCCAGATACTTTACCTCAGTGGCCAGGTTGATGAACGGACAATCCAAAAATATGAGAAGGAAGCCAAGGACAAAAGTAGAGAAAGCTGGTATATGGCCTACATAATGGATACGAATGAGGAAGAGAGGGCAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACGGAGACATCGAGGTTTACGATTTTGGATGCACCGGGTCATAAGAGTTATGTTCCGAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTATTGGTAATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAAAGGTGGTCAAACCCGTGAACATGTTCAGCTTGCAAAAACCCTGGGTGTGTCTAAGCTGCTTGTTGTTGTTAATAAAATGGATGATCCTACAGTGCAGTGGGCAAAAACTAGGTATGACGAAATTGAGTCAAAGATGATACCATTTCTTAAGCAATCGGGCTACAATGTGAAGAAAGATGTCCTGTTTTTACCCATATCTGGGCTAATTGGTGCAAACTTAAAAACAAGAATGGATAAAAGCATTTGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACTCCATTGAAGTTCCTCTACGAGATCCTAACGGTCCTTTCAGGATGCCTATACTTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTCGAATCTGGCAGTATTCGTGAGGGAGATTCCTTGTTGATTATGCCAAATAGGGATCAAGTGAAAGTTGTTGCTATATATATTGATGAGACTCGGGTTAAACGTGCTGGGCCTGGTGAGAATTTACGGGTTAGAGTATCCGGTGTTGAAGAAGAAGACATATCAGCTGGGTTTGTCCTGTCTAGTACTGCAAATCCAATACCCGCTGTTACGGAGTTTGTTGCCCAGCTGCAAATTCTTGAATTGCTGGACAATGCAATTTTTACTGCTGGGTACAAGGCTATTCTTCACGTCCACTCTGTAGTTGAAGAGTGTGAGGTTATTGAGCTCATATCTCAAATTGATCCAAAGACAAGGAAGCCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGGTGTTGTGTGCCGAATTCAGGTTAATAACTCCATATGCATCGAGAAATTCTCTGACTTTCCACAACTTGGGAGATTCACTCTTCGTACTGAAGGAAAAACTGTTGCAGTGGGAAGGATCAATAGTTTTTAA 1548 0.4102 MADIEEDIRSLQLESADIAEDSNGVVSPDDGKTEVEESANTQQEVEEHINADEDPKQEVQEQSIKTEIKDKEIPPVQDEEDEEDILSKKRHLNVVFIGHVDAGKSTTGGQILYLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVQWAKTRYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGANLKTRMDKSICPWWDGPCLFEALDSIEVPLRDPNGPFRMPILDKFKDMGTVVMGKVESGSIREGDSLLIMPNRDQVKVVAIYIDETRVKRAGPGENLRVRVSGVEEEDISAGFVLSSTANPIPAVTEFVAQLQILELLDNAIFTAGYKAILHVHSVVEECEVIELISQIDPKTRKPMKKKVLFVKNGAGVVCRIQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGRINSF* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2104 515 MobiDBLite consensus disorder prediction 1 67 - -
Mtr6g2104 515 MobiDBLite consensus disorder prediction 30 67 - -
Mtr6g2104 515 Coils Coil 1 21 - -
Mtr6g2104 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 324 IPR027417 -
Mtr6g2104 515 PRINTS GTP-binding elongation factor signature 93 106 IPR000795 GO:0003924|GO:0005525
Mtr6g2104 515 PRINTS GTP-binding elongation factor signature 152 160 IPR000795 GO:0003924|GO:0005525
Mtr6g2104 515 PRINTS GTP-binding elongation factor signature 172 182 IPR000795 GO:0003924|GO:0005525
Mtr6g2104 515 PRINTS GTP-binding elongation factor signature 188 199 IPR000795 GO:0003924|GO:0005525
Mtr6g2104 515 PRINTS GTP-binding elongation factor signature 232 241 IPR000795 GO:0003924|GO:0005525
Mtr6g2104 515 SUPERFAMILY Translation proteins 312 405 IPR009000 -
Mtr6g2104 515 CDD EF1_alpha 93 313 - -
Mtr6g2104 515 PANTHER TRANSLATION FACTOR 3 509 - -
Mtr6g2104 515 Pfam Elongation factor Tu GTP binding domain 89 291 IPR000795 GO:0003924|GO:0005525
Mtr6g2104 515 CDD eRF3_II 320 401 - -
Mtr6g2104 515 CDD eRF3_C_III 407 512 - -
Mtr6g2104 515 Pfam Elongation factor Tu domain 2 333 399 IPR004161 GO:0005525
Mtr6g2104 515 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 89 315 IPR000795 GO:0003924|GO:0005525
Mtr6g2104 515 Pfam Elongation factor Tu C-terminal domain 406 513 IPR004160 -
Mtr6g2104 515 Gene3D Translation factors 408 515 - -
Mtr6g2104 515 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 145 160 IPR031157 -
Mtr6g2104 515 Gene3D - 67 313 IPR027417 -
Mtr6g2104 515 Gene3D Translation factors 318 403 - -
Mtr6g2104 515 PANTHER BNAA06G12300D PROTEIN 3 509 - -
Mtr6g2104 515 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 409 513 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2104 Mtr-Chr6 37663481 37676209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2104 89 514 Eukaryotic Initiation Factors Gene Family AT5G60390 37.995 1.07e-97 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2104 K03267 - gmx:100793653 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2104 6 37663481 37676209 Mtr6g2104 6 37663481 37676209 ECH