Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2091 ATGGGAATCAAAGATCTTCTCAGATTCATGAAACCTTACGTTGAACCAATTCACATCAAGAACTACGCTGGAAAACGTGTGGGTATTGATGCATATTCATGGCTTCATAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCTAATAGTGAAAGGAAATTGCGGTATATTGAATACTTCATGCATAGAGTGAATTTGCTTCGGTACTATAATGTAACACCAGTTGTTGTTTTTGATGGCGGCAATGTTCCTTGCAAAGCAGCAACTGAGAAAGAGAGGAACAAAAAAAGGAATACTAATCGTGAGTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAACGCTGCATCAGAACTCTTTCAGAGAGCAGTGAATATTACTCCTGTTATGGCTCATAAGCTAATTCAGACTCTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACTTGTCCAACCTTGAAACCGAAAAAGGCGGCATTGCAGCAGTGATTACAGAAGATAGTGATCTGTTAACATATGGTTGTCCAGCTGTTATTTTTAAGATGGACCGTGAGGGGAATGGCGAAAGAATTGAGTTAGAGAAGGTTTTTTCTGCCGAATCTTGTAAACCTTCGTTTCAAAGTTTCAATATGAAACTTTTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGAGCGCATGCCTTAGTTTCGAAGTATCGGAATATCGATCGTATCTTGTCTGTTCTTAAGCTTGAGAAAGGCGATCAAATGCCCGAAGATTATGCCAAATCCTTCAAGGATGCACTTGCTGTATTTGAGCATGCTCGAATATATGATATCAATACCAAAGAGCTCAAGCACATGAAGCCTCTTCCGGAAAGTTTTCTTGAGTCACTTGACGAAGACCTCAATTTTTTGGGGCCAGAAATTCCCTCAACTATAGTCAAAGCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCCTTTGATAAATCTGAATGTTCTAGACTTCCTTTACATCCCATTGATCCCCATACCATTGGTCAACTCAAGAAAAGTGAAGTTCCTACAATTAAACAGGATAATTGTTTTTCAATCTTTGGCTCCCAGAATACCAATAAAAATTGTACAGTGACAAGGCTCTCAGATAAAGATAAGTATTCCAATGAAGTAACGGCACTTCAGAAACTAATCATGCCATTGGAAACAAATGAAACAATGACAAAGCCATTTACATTTGATGAAACTCATTTGAAGGTTCCTAACAACAATCCTTTTAGGATAAGAAAACACGAGGAGGAAATAAGTTTGGTTCAGAAAGAGGAAACAATGGAAGAGATTTCTATTGTAAGCAGTGGTGAATATATTGATCTTAATGATTACATGTCACCAATTAACTTTCAAGAAGAAGGGTCTATAAATCTCTTAAAGAAAAGGAAATTTGAGAATGTTTGCTTAGATAAAGTAGAAGTCACTGATGAACAGGTTTCAGGAGTGACTGAAGTGGAAAATTGTGATGGTTTATGCTTGAATATGGAGTCACAAGAAAGTGTAAAGTCTAAGATTAGGAATAGTTCTGATTTGAAAGGAAGTGGTGGAAGCGAAAAGAAATCCAAGAAGAAAAAGGAGAGTAACATCAGAACTATTTTGAGTTTCTTTTCAAAAGTGTAA 1725 0.3751 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSNSERKLRYIEYFMHRVNLLRYYNVTPVVVFDGGNVPCKAATEKERNKKRNTNRELAMAKLKEGNVNAASELFQRAVNITPVMAHKLIQTLKSENIEFVVAPYEADAQLAYLSNLETEKGGIAAVITEDSDLLTYGCPAVIFKMDREGNGERIELEKVFSAESCKPSFQSFNMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNIDRILSVLKLEKGDQMPEDYAKSFKDALAVFEHARIYDINTKELKHMKPLPESFLESLDEDLNFLGPEIPSTIVKAIAEGNLNPSTKEAFDKSECSRLPLHPIDPHTIGQLKKSEVPTIKQDNCFSIFGSQNTNKNCTVTRLSDKDKYSNEVTALQKLIMPLETNETMTKPFTFDETHLKVPNNNPFRIRKHEEEISLVQKEETMEEISIVSSGEYIDLNDYMSPINFQEEGSINLLKKRKFENVCLDKVEVTDEQVSGVTEVENCDGLCLNMESQESVKSKIRNSSDLKGSGGSEKKSKKKKESNIRTILSFFSKV* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2091 574 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 562 - -
Mtr6g2091 574 MobiDBLite consensus disorder prediction 548 562 - -
Mtr6g2091 574 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Mtr6g2091 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mtr6g2091 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Mtr6g2091 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Mtr6g2091 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Mtr6g2091 574 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Mtr6g2091 574 Gene3D - 218 291 - -
Mtr6g2091 574 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Mtr6g2091 574 CDD H3TH_FEN1-like 225 295 - -
Mtr6g2091 574 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518
Mtr6g2091 574 SMART xpgineu 141 213 IPR006086 GO:0004518
Mtr6g2091 574 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Mtr6g2091 574 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Mtr6g2091 574 MobiDBLite consensus disorder prediction 536 562 - -
Mtr6g2091 574 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 348 IPR036279 -
Mtr6g2091 574 Gene3D - 1 213 - -
Mtr6g2091 574 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 562 IPR006084 -
Mtr6g2091 574 SMART xpgn3 1 102 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2091 Mtr-Chr6 37491164 37496439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2091 1 321 Core DNA Replication Machinery Family AT5G26680 24.471 6.91e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2091 K10746 - gmx:100817932 803.512