Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2058 ATGGATCCAAAACCATGTGATAAATCAGTGAAAAATTCTTCAGATTTCATGTCTGAGAAGAAGATTCTCCACTCAGTTGATAAATCAATTGCATGCCCCACCCCAGAGAAGAAGACTGAACCATTATTAGCCACCAATTTAAAAGATTCAAATACCCAGCTTCCAGAAAAGTACAAGAATATTGGTGATTTGTTTAGTGATATGAGTTGCGCACTTAGATTGTTGCATCTGCGTAAAAAGTCTCCAACTTTTCAAAATATTTGCAACAAGGTTGAAGTTCTTGCTAAGAGAAACTTCTCTTATGCTCATCTAGCACAGATGAAGTATATACTTCCCAAAGGTATAGAAATTGAAAAGGTGGTTGTTGTGGATAAGAAGAGCTTGTGTATGAAGCCGGATTTGAAGATAACCTTGGTATTTGACGTTGTAGAAGATCATTCCGAACAGTCTGCTGATTTGGCTCTTATTCGATATTTTAATTCCAAGCTGATTAATTTCTTTAATCTGCATCCTGAGGTGACTGATATTCCAGAGGCCGCACTACCAGAGCCCTTTAGCCAAAGACCTTATAACTTGATTTTCAAAGATGGAACTGTAAATTTGTCAAAAGAACTTTCATCAACTTCCAATGAAATTGAACTGTCACTGAACAACTTACATCTGAGTCCATCTTTTAAAAGACACTTTTCTCAGAAGAATGTTGCTAACGAGACTGAGCTAGTTCAGAGCTTTTCATCATCTGAAAACTCTATGTCATCCCATGAATCTGACTGGCTGGATAACCAAGAAAGTGAAAGCACATGGCAGAAAGAATGTACACCATTGTCTGATTGTGTGAGTAATAATGTAGAAAGAGGCAAGCAGAAGGAATCACAGTCCATGTGTATTCAACAAAATGTTATTAATACACCAGTACATAAGATCTACCATCCACATTCTGTTAGCCGCATTGAAAGCCCTGATTTGAAAATTGTTTCTTGTACGGATAGTTTGTTGACACACACTCCTGCACAGTCAGCACCTGAGAGATTGTTGCTCGGTTCTGATGTTAAGCTTCAGAAAATGACTGCCCAAAAGTCTGGGTCGTGTTTTAAGCCTGCAAAGAGAGTGCTCGACTTTACACTCACCGAAGGCAGCGATGCTTTCGACAGTAGAGTAGACATGTCTAAACCTAGCAGAGGATGTTCTGAGGACTTCAAATCTTTTGATTCTGTTTCCCCGCCTCAGGAGGTAGATGAGAACCTTAGTCATTCTTTTCAGAAAATCAACGTAGATCAACACTGTTTGGTTGCATCGGATAACAATCCTTCATCATTGGTGGAACTGGTTAATGTGATTGATTCTATATTTGACTCTGTCAAAAGAACTTCAATGACAAAAGAGGAGCTCTTGCAAAAGATAATGATGAACTGTTTAGATTTTGTTAAGATTAGAGAAGCTGAAGAACAGATTGAGATTTTGGAAAAGACTGTGCCAGACTGGCTTTGCAAAAAGGTGGTTTCTTCTGGAGACACTATGTACTGTGTCAAGAATGCGTTAGATTTGGACTCAGTTCGATCGAGGCTTCTCAGCAATGTCAACAAAGGAGATGAGTGA 1596 0.3878 MDPKPCDKSVKNSSDFMSEKKILHSVDKSIACPTPEKKTEPLLATNLKDSNTQLPEKYKNIGDLFSDMSCALRLLHLRKKSPTFQNICNKVEVLAKRNFSYAHLAQMKYILPKGIEIEKVVVVDKKSLCMKPDLKITLVFDVVEDHSEQSADLALIRYFNSKLINFFNLHPEVTDIPEAALPEPFSQRPYNLIFKDGTVNLSKELSSTSNEIELSLNNLHLSPSFKRHFSQKNVANETELVQSFSSSENSMSSHESDWLDNQESESTWQKECTPLSDCVSNNVERGKQKESQSMCIQQNVINTPVHKIYHPHSVSRIESPDLKIVSCTDSLLTHTPAQSAPERLLLGSDVKLQKMTAQKSGSCFKPAKRVLDFTLTEGSDAFDSRVDMSKPSRGCSEDFKSFDSVSPPQEVDENLSHSFQKINVDQHCLVASDNNPSSLVELVNVIDSIFDSVKRTSMTKEELLQKIMMNCLDFVKIREAEEQIEILEKTVPDWLCKKVVSSGDTMYCVKNALDLDSVRSRLLSNVNKGDE* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2058 531 CDD Cdt1_m 35 184 IPR014939 -
Mtr6g2058 531 Pfam DNA replication factor CDT1 like 54 118 IPR014939 -
Mtr6g2058 531 Pfam DNA replication factor Cdt1 C-terminal domain 438 495 IPR032054 -
Mtr6g2058 531 SUPERFAMILY "Winged helix" DNA-binding domain 51 185 IPR036390 -
Mtr6g2058 531 SMART CDT1_2 54 183 IPR014939 -
Mtr6g2058 531 PANTHER EXPRESSED PROTEIN 3 524 - -
Mtr6g2058 531 Coils Coil 477 497 - -
Mtr6g2058 531 MobiDBLite consensus disorder prediction 240 262 - -
Mtr6g2058 531 Gene3D - 433 529 IPR038090 -
Mtr6g2058 531 PANTHER DNA REPLICATION FACTOR CDT1 3 524 IPR045173 GO:0003677|GO:0030174|GO:0071163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2058 Mtr-Chr6 37149249 37154190 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2058 439 522 Core DNA Replication Machinery Family AT2G31270 39.286 1.02e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2058 K10727 - gmx:102670055 542.732