Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2056 ATGGCTTCCCTCACTGTCACAGATCGATTCAAGTACGATGTTTTCCTCAGCTTTCGAGGTGAGGATACTCGCTATGGTTTCACTGGCAATCTCAAGAAAGCTCTTGATGACAAAGGGGTCCGAACTTTCATCGATGATGAAAAGCTTAAAAAAGGAGATGAAATCACACCATCACTTCTCAAAGCAATTGAAGACTCCATGATGGCCATCATTGTCCTCTCTGAAAATTATGCTTCTTCATCCTTTTGCTTACAAGAACTTTCTCATATCCTTGATACAATGAAAGATAAGGCGGGTCGTTACGTTTTGCCGGTATTTTATAAGGTTGATCCTTCTCATGTACGAAAGTTGAAAAGGAGTTATGGTGAAGCCATGAAAAAACATGATGTGGCCAGCTCCTCAAGTCATAACATGAATAATAAATGGAAGGACTCTCTTCACCAAGTTGCTAATTTGTCCGGCTCTCATTACAAAGGGGATAAGTATGAGTACGAGTTTATTGAGAATATTGTTGAACAAGTCTTAAGAAATATAAAACCTATTGTCTTACCTGTTGGTGATTACCTAGTTGGACTAGAGCACCAAAAGCAACATGTGACTTCGCTTTTGAATGTTGGGTCTGATGATACAATCCACATGGTCGGGATCCATGGGATTGGTGGAATAGGAAAAACTACTCTTGCTCTAGAAGTTTATAATTCGATTGTCCGTCAATTTGAATGTTCCTGTTTTTTTGAAAAAGTCAGAGACTTTAAGGAAAGTGGGTTGATATATCTCCAAAAGATCCTTCTGTCTCAAATTGTTGGAGAGACAAAAATGGAGATAACAAGTGTTAGACAGGGAGTTTCGATATTACAACAAAGGCTTCACCAAAAGAAGGTTCTTTTACTTCTGGATGATGTTGACAAGGATGAGCAATTAAAGGCTATTGCTGGAAGTTCCGATTGGTTTGGTCTAGGAAGTAGAGTCATCATCACGACTCGGGACAAAAGGTTGCTAACATATCATGGGATTGAAAGAACATATGAGGTGAAGGGATTGAACGATGCTGCTGCTTTTGACTTGGTGGGATGGAAAGCTTTAAAAAATGATTATAGTCCCATCTATAAAGATGTTTTATTAGAACAAAAGCAAGGAAGAGAATTGAATGCGAATGAATTGCGTAGATTGAAAGATTTGAAGAATGACGTACGTTTTTCAAGTTATGCGAATGTTTTAAAACGTGCTGTAGCATATGCTTCTGGCCTTCCACTTGCTTTGGAAGTCATAGGTTCTCACTTTTTTAACAAGACAATAGAACAATGTAATTATGTACTAGATCGTTGTGAAAGGGTTCCTGATAAAAAGATCCAAACAACACTACAAGTGAGCTTTGATGCTTTGCAGGATGAAGACAAATTTGTTTTTCTTGACATTGCTTGTTGCCTCAAAGGATGGAATTTGATAAGAGTCGAAGAAATACTTCATGCTCATTATGGTAATATCATGAAAGATCACATTGATGTGTTAGTGGAAAAATCTCTCATAAAAATAAGCGATTCCGGCAATATAACATTACATGATTTAATAGAGGATATGGGGAAAGAAATTGTTAGAAGAGAATCACCTGAAAATCCTGGAAAGCGCACTAGGTTATGGGCCTATGAAGATATAAAGAAAGTTTTTAAAGAAAATACGGGAACAAGTACCATTAAAATCATACATTTCCAATTTGACCCATGGATTGAAAAAAAGAAGGATGCCTCAGATGGAAAAGCTTTCAAGAAGATGAAAAATCTCAGAACACTAATTTTTAGTACTCCTGTTTGTTTTTCTGAAACTTCTGAACATATTCCAAATAGTCTACGAGTGCTAGAATATTCCAATCGCAATCGCAATTATTACCATAGCCGTGGATCAAATCTATTTGAGTGGGACGGCTTTCTCAAAAAGGCAAGTGATTCATATCTCTTTTTCTATATTAATATGATTTTGATTCCAATATAA 1986 0.3671 MASLTVTDRFKYDVFLSFRGEDTRYGFTGNLKKALDDKGVRTFIDDEKLKKGDEITPSLLKAIEDSMMAIIVLSENYASSSFCLQELSHILDTMKDKAGRYVLPVFYKVDPSHVRKLKRSYGEAMKKHDVASSSSHNMNNKWKDSLHQVANLSGSHYKGDKYEYEFIENIVEQVLRNIKPIVLPVGDYLVGLEHQKQHVTSLLNVGSDDTIHMVGIHGIGGIGKTTLALEVYNSIVRQFECSCFFEKVRDFKESGLIYLQKILLSQIVGETKMEITSVRQGVSILQQRLHQKKVLLLLDDVDKDEQLKAIAGSSDWFGLGSRVIITTRDKRLLTYHGIERTYEVKGLNDAAAFDLVGWKALKNDYSPIYKDVLLEQKQGRELNANELRRLKDLKNDVRFSSYANVLKRAVAYASGLPLALEVIGSHFFNKTIEQCNYVLDRCERVPDKKIQTTLQVSFDALQDEDKFVFLDIACCLKGWNLIRVEEILHAHYGNIMKDHIDVLVEKSLIKISDSGNITLHDLIEDMGKEIVRRESPENPGKRTRLWAYEDIKKVFKENTGTSTIKIIHFQFDPWIEKKKDASDGKAFKKMKNLRTLIFSTPVCFSETSEHIPNSLRVLEYSNRNRNYYHSRGSNLFEWDGFLKKASDSYLFFYINMILIPI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2056 661 PRINTS Disease resistance protein signature 213 228 - -
Mtr6g2056 661 PRINTS Disease resistance protein signature 288 302 - -
Mtr6g2056 661 PRINTS Disease resistance protein signature 413 427 - -
Mtr6g2056 661 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 631 IPR044974 GO:0006952
Mtr6g2056 661 Gene3D - 382 462 IPR042197 -
Mtr6g2056 661 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Mtr6g2056 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 472 IPR027417 -
Mtr6g2056 661 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Mtr6g2056 661 Pfam NB-ARC domain 196 448 IPR002182 GO:0043531
Mtr6g2056 661 PANTHER ARCHAEAL ATPASE 22 631 - -
Mtr6g2056 661 SMART till_3 11 152 IPR000157 GO:0007165
Mtr6g2056 661 Pfam TIR domain 11 178 IPR000157 GO:0007165
Mtr6g2056 661 SUPERFAMILY "Winged helix" DNA-binding domain 448 555 IPR036390 -
Mtr6g2056 661 Gene3D - 177 339 IPR027417 -
Mtr6g2056 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 373 IPR027417 -
Mtr6g2056 661 Gene3D - 9 176 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2056 Mtr-Chr6 37126846 37131947 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2056 12 620 WRKY Transcription Factor Family AT4G12020 27.345 2.90e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2056 - - mtr:MTR_6g079120 1164.06