Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2054 ATGAAAGTTTTAAATTATGATTGCGATACACTATTAACAAGAATGCCTGATATCTCTAATCTCCCAAATTTAGAACAATTTTCAATTCAAGATTGTACTAGTTTAATTACAATTGATGAATCTATTGGCTTTTTGAGTAAACTTAAAATCTTGAGATTGATAGGTTGCCATAACCTCCACAGTGTTCCACCACTCAATTCAGCTTCACTGGTAGAACTCAATCTTTCACACTGTCATAGTCTAGAAAGTTTTCCTCTCGTGGTGAGTGGATTTCTTGGAGAACTTAAAATCTTGAGGGTTATAGGTTGCAGCAAAATCAGACTTATTCAATCTCTCGTGTTACCTTCTCTAGAAGAACTCGATCTTTTAGATTGTACTAGTCTTGACAGTTTTTCAAATATGGTGTTTGGTGATAAGCTTAAAACCATGAGTTTTAGAGGTTGCTACGAGTTAAGGAGTATTCCACCTCTCAAGTTGGATTCACTTGAAAAACTTTACCTATCATATTGTCCCAATCTCGTGAGTATATCACCTCTCAAGTTGGATTCACTAGAAAAACTTGTCCTTTCAAATTGTTATAAGCTCGAGAGCTTCCCAAGCGTGGTGGATGGGTTGTTGGATAAACTTAAAACCCTGTTTGTTAAAAATTGTCACAATCTCAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAACCTTGACCTATCACATTGTCGCAATCTCGTGAGTATCTCACCTCTCAAGTTGGATTCACTAGAAAAACTTTGCCTTTCAAATTGTTATAAGCTCGAGAGCTTCCCAAGCGTGGTGGATGGGTTTCTTGGAAAACTTAAAACCCTGTTTGTTCGAAATTGTCACAATCTTAGGAGTATTCCAGTTCTCAAGTTGGATTCACTTGAAAAACGTGACCTATCACATTGTCGCAATCTCGTGAGTATATCACCTCTCAAGTTGGATTCACTAGAAAGACTTGTCCTTTCAAATTGTTATAAGCTCGAGAGCTTCCCAAGCGTGGTGGATGGGTTTCTTGGAAAACTTAAAACCCTGTTTGTTAAAAATTGTCACAATCTTAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAATTTTGACCTATCACATTGTCACAATCTTGTGAGTATTTCACCTCTCAAGTTGGATTCACTTGAAAATTTTGACCTATCACATTGTCACAATCTTGTGAGTATTTCACCTCTCAAGTTGGATTCACTAGAAAAGCTTGTCCTTTCAAATTGTTATAAGCTCGAGAGCTTTCCAAGCGTGGTGGATGGGTTGTTGGATAAACTTAAAACCCTGTTTGTTAAAAATTGTCACAATCTCAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTGACCTATCACATTGTCACAAACTTGTGAGTATTTCACCTCTCAAGTTGGATTCACTAGAAAAACTTGTCCTTTCAAATTGTTATAAGCTCGAGAGCTTTCCAAGCGTGGTGGATGGGTTGTTGGATAAACTTAAAACCCTGTTTGTTAAAAATTGTCACAATCTCAGGAGTATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTGACCTATTACATTGTCACAATCTTGTGAGTATTTCACCTCTCAAGTTGGATTCACTAGAAAAACTTGTCCTTTCAAATTGTTATAAGCTCGAGAGCTTTCCAAGCGTGGTGGATGGGTTGTTGAATAAACTTAAAACCCTGTTTGTTAAAAATTGTCACAATCTCAGGAATATTCCAGCTCTCAAGTTGGATTCACTTGAAAAACTTGACCTTTCAGATTGTTATAAGCTCGAGAGCTTTCCAAGTGTGGTGGATGGGTTGTTGGATAAATTGAAATTCTTGAATATTGTAAACTGCATCATGCTTAGGAATATCCCACGGCTCAGCCTGACTTCGTTGGAACATTTCAATCTTTCATGTTGTTATAGGCTTGAGAGTTTTCCAGAAATATTGGGAGAGATGAGAAATATACCAAGACTCCACTTGGATGAAACTCCCATAAAAGAATTTCCATTTCAATTTCAAACTCTTACTCAGCCTCAAAGATTTGTTTCATGTGACTGTGGATATGGCCGCTTACCAAATAGAGATGTTGTGATGTCAGAATCGGCTGAACTTACCATCAAGGCTGAAGAAAAAATGAACCAAATGCAATCTTCACATGTAAAGTATATTTGTGTCAGGAACTGCAAACTTTCAGATGAATATCTGTCAATAAGTCTCATGTTGTTTGCTAATGTGAAAGAACTACACATAACTAACTGTCAATTCACAGTTATTCCTAAATCTATTGAAAAATGTCAATTTTTATGGAAAATCGTCTTGGATGATTGTAAGGAACTTATGGAAATGAAAGGGATTCCTCCATGCTTAAGAGAGTTATCTGCACTAAACTGCATATTGACTTCGTCGTGCAAAAGCAAATTACTAAATCAGAAATTACATGAGGCTGGAAATACTCGGTTTCGTTTGCCACGTGCAAAGATTCCAGAGTGGTTCGACCACCAATGCGAGGCAGGAAAGTCAATTTCTTTCTGGTTTTGTGGCAAGTTTCCTGCCATAGCTCTCTGTGTTGTTTCTCCACTTACATGGGGTAATTCTTCTGAACACCTTGTAAGAGTGATCATCAACGGAAATACATTTTTCTATACACATGGGTGGCAGCGTGTTATGGGAACTCAGCCGGACATGTATCATTTGCATCTTTTTCATATGCAAATGGAATACTTCAATGATAATATGGACAAGGCACTTTTAGAAAATAAATGGAACCATGCAGAGGTTGACTTTGGATTCCCATTCATGTTTAGTGGAATCCATGTATTGAAAGAGAAAAGTAGCATGAAAGATATTCGATTCACCAACCCAGAGAATGATGCTAACACTGTTCACTTGGGATTAAGTCATGCTACCAGAGCCCTTTAA 2961 0.3745 MKVLNYDCDTLLTRMPDISNLPNLEQFSIQDCTSLITIDESIGFLSKLKILRLIGCHNLHSVPPLNSASLVELNLSHCHSLESFPLVVSGFLGELKILRVIGCSKIRLIQSLVLPSLEELDLLDCTSLDSFSNMVFGDKLKTMSFRGCYELRSIPPLKLDSLEKLYLSYCPNLVSISPLKLDSLEKLVLSNCYKLESFPSVVDGLLDKLKTLFVKNCHNLRSIPALKLDSLENLDLSHCRNLVSISPLKLDSLEKLCLSNCYKLESFPSVVDGFLGKLKTLFVRNCHNLRSIPVLKLDSLEKRDLSHCRNLVSISPLKLDSLERLVLSNCYKLESFPSVVDGFLGKLKTLFVKNCHNLRSIPALKLDSLENFDLSHCHNLVSISPLKLDSLENFDLSHCHNLVSISPLKLDSLEKLVLSNCYKLESFPSVVDGLLDKLKTLFVKNCHNLRSIPALKLDSLEKLDLSHCHKLVSISPLKLDSLEKLVLSNCYKLESFPSVVDGLLDKLKTLFVKNCHNLRSIPALKLDSLEKLDLLHCHNLVSISPLKLDSLEKLVLSNCYKLESFPSVVDGLLNKLKTLFVKNCHNLRNIPALKLDSLEKLDLSDCYKLESFPSVVDGLLDKLKFLNIVNCIMLRNIPRLSLTSLEHFNLSCCYRLESFPEILGEMRNIPRLHLDETPIKEFPFQFQTLTQPQRFVSCDCGYGRLPNRDVVMSESAELTIKAEEKMNQMQSSHVKYICVRNCKLSDEYLSISLMLFANVKELHITNCQFTVIPKSIEKCQFLWKIVLDDCKELMEMKGIPPCLRELSALNCILTSSCKSKLLNQKLHEAGNTRFRLPRAKIPEWFDHQCEAGKSISFWFCGKFPAIALCVVSPLTWGNSSEHLVRVIINGNTFFYTHGWQRVMGTQPDMYHLHLFHMQMEYFNDNMDKALLENKWNHAEVDFGFPFMFSGIHVLKEKSSMKDIRFTNPENDANTVHLGLSHATRAL* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2054 986 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 2 133 - -
Mtr6g2054 986 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 228 450 - -
Mtr6g2054 986 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 366 590 - -
Mtr6g2054 986 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 527 819 - -
Mtr6g2054 986 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 113 243 - -
Mtr6g2054 986 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 139 366 - -
Mtr6g2054 986 SUPERFAMILY L domain-like 250 516 - -
Mtr6g2054 986 Gene3D Ribonuclease Inhibitor 543 730 IPR032675 -
Mtr6g2054 986 PANTHER - 366 590 - -
Mtr6g2054 986 PANTHER - 113 243 - -
Mtr6g2054 986 PANTHER - 527 819 - -
Mtr6g2054 986 PANTHER - 2 133 - -
Mtr6g2054 986 PANTHER - 228 450 - -
Mtr6g2054 986 PANTHER - 139 366 - -
Mtr6g2054 986 SUPERFAMILY L domain-like 495 821 - -
Mtr6g2054 986 Pfam BspA type Leucine rich repeat region (6 copies) 353 449 IPR026906 -
Mtr6g2054 986 Pfam BspA type Leucine rich repeat region (6 copies) 470 587 IPR026906 -
Mtr6g2054 986 Pfam BspA type Leucine rich repeat region (6 copies) 238 336 IPR026906 -
Mtr6g2054 986 Pfam BspA type Leucine rich repeat region (6 copies) 125 219 IPR026906 -
Mtr6g2054 986 Gene3D Ribonuclease Inhibitor 114 272 IPR032675 -
Mtr6g2054 986 Gene3D Ribonuclease Inhibitor 1 113 IPR032675 -
Mtr6g2054 986 Gene3D Ribonuclease Inhibitor 456 542 IPR032675 -
Mtr6g2054 986 Gene3D Ribonuclease Inhibitor 731 928 IPR032675 -
Mtr6g2054 986 Pfam C-JID domain 836 950 IPR045344 -
Mtr6g2054 986 Gene3D Ribonuclease Inhibitor 273 455 IPR032675 -
Mtr6g2054 986 SUPERFAMILY L domain-like 11 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2054 Mtr-Chr6 37119156 37123245 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2054 504 690 WRKY Transcription Factor Family AT4G12020 33.679 1.14e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2054 - - mtr:MTR_3g006280 1059.67