Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2053 ATGGCATCCCTCGCAGATCAATTCAAGTACGATGTTTTCCTCAGCTTCAGAGGCGAAGATACTCGCCATGGTTTCACTGGCTATCTCAAGAAAGCTCTTGATGACAAAGGAGTTCGAACTTTCATGGATGATAAGGAGCTACGAAAAGGTGAAGAAATCACACCATCACTTCTTAAAGCAATTGAACAGTCCATGATGGCCATCGTTGTCCTCTCTGAAAATTATGCTTCTTCATCCTTTTGCTTACAAGAACTTTCTAAGATCCTTGATACGATGAAAGATATGGTGGGTCGTTCCGTTTTTCCGGTTTTTTATAAGGTTGATCCTTCTGATGTACGAAAGCTGAAAAGAAGTTTTGGAGAAGGAATGGATAAACATAAGGCCAACTCCAATCTGGATAAATGGAAGGTGTCTCTTCACCAAGTTACTGACTTGTCCGGCTTTCATTACAAAGGGGATACGCCTGAGCATATGTTTATTGGGGACATTGTTGAACAAGTCTTAGGAAATATAGAACCTCTTGCCTTACCGGTTGGTGATTACCTAATTGGACTGGAGCACCAAAAGCAACATCTGACTTCCCTTTTGAATATTGGGTCAGATGATACAGTCCACATGGTAGGGATCCATGGGATGGGTGGAATTGGGAAAACAACTCTTGCTCTATCTGTTTATAATTTGATTGCCCATGAATTTGATGCTTCATGTTTTCTTGAAAATGTTAGGGAAAATCATGAAAAACATGGGTTACCATATCTCCAAAACATCATTCTTTCCAAAGTAGTTGGGGAGAAAAATGCCTTAACCGGTGTTCGACAAGGAATTTCAATATTGGAGCAGAGGCTCCGACAAAAGAAGTTACTTTTGATTCTAGACGATGTTAACGAGCAAGAACAATTAAAAGCTCTGGCCGGAAAACACAAATGGTTTGGTCCCTCAAGTCGAATCATCATCACAACTCGGGATAAAAAGTTGCTAACATGTCATGGGGTTGAACATACATATGAGGTGAGAGGGTTGAATGCCAAAGATGCTTTTGAGTTGGTTAGATGGAAAGCTTTTAAAGATGAATTTAGTCCAAGCGATGAAAATGTTTCATTAGCACAATTGCATGTTATAGAACGTGTCGTAGCATATGCTTCTGGTCATCCACTTGCTTTAGAAGTCATGGGTTCTCACTTTTCTAATAAGACAATAGAACAATGTAAAGATGCACTAGATCGTTATGAAAAAGTTCCTCATAAAAAGATCCAAACAACACTACAAATTAGCTTTGATGCTTTGGAAGACGAAGAGAAGTTTGTTTTTCTTGACATTGCTTGTTGCTTTAAAGGATGCAAATTAACAAGGGTCGATGAAATACTTCATGCCCATCATGGTGAAATCGTGAAAGATCACATTAATGTGTTAGTGGAAAAATCTCTCATAAAAATAAATGAGTTTGGTAATGTGACATTGCATGATTTGGTAGAGGATATGGGTAAAGAAATTGTTAGACAAGAATCGCCTCAAGATCCTGGAAAACGCACTAGATTATGGTTTTCTAATGATATAATGCAAGTTTTAGAAGAAAATACAGTGAGTAATAATGTTATGGATAATTTGGCATTCCACCATTAA 1620 0.3815 MASLADQFKYDVFLSFRGEDTRHGFTGYLKKALDDKGVRTFMDDKELRKGEEITPSLLKAIEQSMMAIVVLSENYASSSFCLQELSKILDTMKDMVGRSVFPVFYKVDPSDVRKLKRSFGEGMDKHKANSNLDKWKVSLHQVTDLSGFHYKGDTPEHMFIGDIVEQVLGNIEPLALPVGDYLIGLEHQKQHLTSLLNIGSDDTVHMVGIHGMGGIGKTTLALSVYNLIAHEFDASCFLENVRENHEKHGLPYLQNIILSKVVGEKNALTGVRQGISILEQRLRQKKLLLILDDVNEQEQLKALAGKHKWFGPSSRIIITTRDKKLLTCHGVEHTYEVRGLNAKDAFELVRWKAFKDEFSPSDENVSLAQLHVIERVVAYASGHPLALEVMGSHFSNKTIEQCKDALDRYEKVPHKKIQTTLQISFDALEDEEKFVFLDIACCFKGCKLTRVDEILHAHHGEIVKDHINVLVEKSLIKINEFGNVTLHDLVEDMGKEIVRQESPQDPGKRTRLWFSNDIMQVLEENTVSNNVMDNLAFHH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2053 539 PRINTS Disease resistance protein signature 206 221 - -
Mtr6g2053 539 PRINTS Disease resistance protein signature 281 295 - -
Mtr6g2053 539 PRINTS Disease resistance protein signature 380 394 - -
Mtr6g2053 539 Gene3D - 340 429 IPR042197 -
Mtr6g2053 539 Gene3D - 174 333 IPR027417 -
Mtr6g2053 539 SMART till_3 9 145 IPR000157 GO:0007165
Mtr6g2053 539 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 148 IPR035897 -
Mtr6g2053 539 PANTHER ARCHAEAL ATPASE 20 527 - -
Mtr6g2053 539 ProSiteProfiles TIR domain profile. 8 167 IPR000157 GO:0007165
Mtr6g2053 539 SUPERFAMILY "Winged helix" DNA-binding domain 415 523 IPR036390 -
Mtr6g2053 539 Pfam TIR domain 9 172 IPR000157 GO:0007165
Mtr6g2053 539 Gene3D - 4 173 IPR035897 -
Mtr6g2053 539 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 527 IPR044974 GO:0006952
Mtr6g2053 539 Pfam NB-ARC domain 196 418 IPR002182 GO:0043531
Mtr6g2053 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2053 Mtr-Chr6 37111971 37114836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2053 204 530 WRKY Transcription Factor Family AT5G45050 35.650 8.73e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2053 - - mtr:MTR_0012s0290 879.396