Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2050 ATGGCTCCCCTCACAGTCACAAATCGATTCAAGTATGATGTTTTTCTCAGCTTTCGAGGTGAGGATACTCGTTATGGTTTCACAAGCTATCTCAAGAAAGCTCTAGATGACAAAGGAGTTAGAACTTTCATGGACGATGAGGAGCTTCAAAAAGGCGAAGAAATCACACCATCACTTCTCAAAGCAATTGAAGACTCCCAAATCGCCATCGTCGTCCTTTCTAAGAATTATGCTTCTTCCTCCTTTTGCTTACAAGAACTTTCTCATATCCTTCATTCCATCAAAGATAAAGGACGTTCCGTTTTGCCGGTATTTTATAAGGTGGATCCCTCTGTTATACGGAAGTTAGAAAAGAGTTATGGAGAAGCAATGGATAAACATAAGGCCAACTCAAATCTTGATAAATGGAAGGTGTGTCTTCACCAAGTAGCTGATTTGTCTGGATTTCATTACAAGAAGAAACGGGATATGCCTGAGCATAAGTTTATTGGGGAGATTGTTGAAAAAGTTTTAGGAAATATAGAACCTGTTGCATTGCCTGTTGGTGATTACAAAGTTGGATTGGAGCACCAAAAGCAACATGTGATTTCCCTTTTGAATGTTGGGTCGGATGATAAAGCATGTATGGTAGGGATCTACGGGATTGGTGGAATAGGGAAAACAACTCTTGCTATTTCTGTTTATAATTTGATTGCCAATGAATTTGAGGTTTCATGTTTTGTTGAAAATGTTAGAGAAAGTCATGAAAAACATGGGTTACCATATCTCCAAAAGATCATTCTTTCTAAAGTAGTTGGGGAGAAAAAGGAGTTAACAAGTGTTCTAAATGGGATTTCAAAATTGGAACAGATGCTCAAGCAAAAGAAGATACTTTTGATTCTTGACGATGTTAATGAGTTAGAGCAATTAGAAGCTCTGGCTGGAAAACACGAATGGTTTAATCGCTCAAGTCGAATCATCATCACAACTCGGGACAAAAGGTTGCTAACATGTCATGGGATTGAATGTAAATATGAGGTGAAGGGGTTGAATGACATAGATGCTGCTGAGTTGGTTAGAAGGAAAGCTTTTAAAGATGAATTTAGTCCAAGCTACAAAAATGTTTCAACAGAAAAAATGCATGTTTTAGAACGTGTTGTAACATATGCCTCTGGTCATCCACTCGCTTTGGAAGTCATGGGTTCTCACTTTTCTAATAAGACAATAGAACAATGTAAAGATGCACTAGATCGTTACGAAAAAATTCCTCATAAAAAGATCCAAATGACACTACAAGTGAGCTTTGATGCTCTGGAGGACGAAGAGAAGTTTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATGGAAATTAACAAGGGTCGAAGAAATACTTCATGTTCATCATGGTGATAACATGAAAGATCACATTAATGTGTTAGTGGAAAAATCTCTCATAAAAATAGATGGGTTTGGTTATGTAGCATTACATGATTTGCTAGAAGATATGGGAAAAGAAATTGTTAGACAAGAGTCACCAAATAATCCGGGAGAACGCAGTAGGTTATGGGACCCTAAAGATATACAAAAAGTTTTAGAAGAAAATAAGGGAACAAGTAAAATTGAAATCATACATTTGGACAGTTGGGTTAAAGTGGAATGGGATGGAGAAGCTTTCAAGAAGATGGAGAATCTTAAAACACTAATTTTTGGTAATAAAGTTTATTTATGTGAAAATCCCAAACATCTTCCAAATAGTCTAAGAGTGCTGGAATGTAGCAAGCTCAATCCATTGGAGTGGGAGGGCTTTCTCACAAAGAAATTCCAGAATATGAGAGTTTTAAATCTCAATAGAAGTCAAGATTTAGCACAAATACCTGATATATCTGGTCTCCTAAATTTAGAAGAATTTTCAATACAATATTGTAAGACACTAATTGCAATTGATAAATCGATAGGTTTTTTAGGTAACCTTAAAATTTTGAGAATTGTAAAATGCACCGAAATCAGAATTATTCCACCTCTCATGTTACCTTCTCTAGAAGAACTCTATCTTTCAGAGTGTAGTAATCTTGAGAATTTTTCACCTGTGATAGATGACTTTGGTGATAAGCTTAAAATAATGAGTGTTAGACATTGCATCAAGCTAAGGAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTAAAACTTTCATTTTGTCATAGTCTTGAGAGTTTTCCACTTGTGGTGGAAGAGTATCTTCGAAAACTTAAAACCATGATTGTTACAAGCTGTCGCAGTCTCAGAAGTTTTCCACCTCTCAAGTTGGATTCACTAGAAACACTAAAACTTTCATTTTGTCATAGTCTTGAGAGTTTTCCACTTGTGGTGGAAGAGTATCTTCGAAAACTTAAAACCATGATTGTTACAAGCTGTCGCAGTCTCAGGAGTTTTCCGCCTCTCAAGTTGGATTCACTAGAAACACTAGAACTTTCAAATTGTCATAGTCTTGAGAGTTTTCCACTTGTGGCGGACGAGTATCTTGGAAAACTTAAAACCATGCTTGTTAAAAATTGTCACAATCTCAAGAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTAGAACTTTCAGATTGTCATAGTCTTGAGAGTTTTCCACTTGTGGCGGACGAGTATCTTGGAAAACTTAAAACCATGCTTGTTAAAAATTGTCACAATCTCAAGAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTAGAACTTTCATGTTGTGATACTCTTGAGAGTTTTCCACTTGTGGTGGACACATTTCTTGCAAAACTTAAAACCCTGAATGTTAAATGTTGTCGCAATCTCAGAAGTATTCCACCTCTCAAGTTGGATTCCCTGGAAACACTAAAACTTTCAGATTGTCATTGTCTTGAGAGTTTTCCACTTGTGGTGGACGAGTATCTTGGAAAACTTAAAACCATGCTTGTTACAAACTGTCGCAGTCTCATGAGTATTACACCTCTCAAGTTGGATTCACTAGAAACACTAAAACTTTCATTTTGTCATAGTCTTGAGAGTTTTCCACTTGTGGTGGAAGAGTATCTTCGAAAACTTAAAACCATGATTGTTACAAGCTGTCGCAGTCTCAGAAGTTTTCCACCTCTCAAGTTGGATTCACTAGAAACACTAGAACTTTCAGATTGTCATAGTCTTGAGAGTTTTCCACTTGTGGTGGACGAGTATCTTGGAAAACTTAAAACCATGCTTGTTAAAAATTGTCACAATCTCAAAAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTAGAACTTTCAGGTTGTGATACTCTTGAGAGTTTTCCACTTGTGGTGGACATATTTCTTGCAAAGCTTAAAACCTTGAAAGTTAAGAGTTGTCGCAATCTCAGAATTATACCACCTCTCAAGTTGGATTCACTAGAAACACTAGAATTTTCGAATTGTCATAGTCTTGAGAGTTTTCCACTTGTGGTGGACGAGTATCTTGGAAAACTTAAAACCATGCTTGTTAAAAATTGTCACAGTCTCAAGAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTAGAACTTTCATGTTGTGATACTCTTGAGAGTTTTCCACTTGTGGTGGACACATTTCTTGCAAAACTTAAAACCCTGAATGTTAAATGTTGTCGCAATCTCAGAAGTATTCCACCTCTTAAGTTGGATTCACTGGAAACACTAGAACTTTCAGATTGTCATAGTCTTGAGAGTTTTCCACTTGTGGTGGACGAGTATCTTGGAAAACTTAAAACCATGCTTGTTACAAACTGTTTCAGTCTCAGGAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTTGATCTTTCATGTTGTTTTAGTCTTGAGAATTTTCCACTTGTGGTTGACGGGTTTCTTGGAAAACTTAAAACCATGCTTGTTAAAAATTGTCACAATCTCAGAAGTATTCCACCTCTTAAGTTGGATTTGCTACAAGAACTTGACCTTTCAAATTGTTTTATGCTCGAGAGTTTTTCAAGTGTGCGGGATGAGTTGTTGGATAAACTTAAATTCGTGAATATTGAATTCTGCATCATGCTTAGGAGTATCCCACAGCTCAGGTTAACTTCTTTGAAATATTTCAATCTTTCATGTTGTTATAGTCTTGAGAGTTTTCCAGAAATATTGGGAGAGATGAGAAATATACCAGGACTCCTCTTGGATGACACTCCCAGTATAGAATCATCGTTTCAATTTCACAATCTTACTCAGCCTCCAACATTTCACCCATGTGACTGTCAGTATGATAACCGATCAGATGGAAATCATCCTAAGCTTACCATCATGAATGAAGAAAAAGTGAATTCAATGCAATCTTCAAATGTAAAGTATATTTGTGTCAGGAATGCTAAACTTTCAGATGAATTATTGTCAAAAACTCTTATGTTGTTTGCCAATGTGAAAGAATTACACCTAACAAACAATCAACTCACAATTATTCCTAAATCTATTGAAAAATGTCAATTTTTATGGAAACTTGTCTTGGATGATTGTAAGGAACTTCACGAAATTAAAGGGATTCCTCCACGCTTAAGAGTGTTATCTGCAGTACACTGCATATCGTTGACTTCGTCGTGCAAAAGCAAATTACTAAATCAGGAATTACATGAGGCTAGAAACACCTGCTTTCGTTTGCCACGGGTTCCAAAGATTCCAAAGTGGTTCGACCACAAATGCGAGGCAGGATTGTCAATTTCTTTCTGGTTTCGTAACAAATTTCCTGCCATAGCTCTTTGTGTTGTTTCTCCATTGACATTTTGGTTTGGATATCATGGTATAAGAGTGAGCATCAACGGCAATAGTTTTATCTATAAATCTAATTCAGAGATATGTTGGAGACAACGGCCGGATATGTATCATTTGCATCTTTTTCATATGCAAACGGAGAACTTCAATGATAATATGGACAAAGCACTTTTAGAAAATAAGTGGAACCATGCAGAGATTTATTTTGGTGTCTCTGCATTCATGTATAGTGGAGTCCATGTATTGAAAGAAAAAAATAGCATGGAGGATATTCGATTCACCAACCCAGCGAATGATGCTAACATTGTGTTACACTCGGGATGTTGA 5133 0.3668 MAPLTVTNRFKYDVFLSFRGEDTRYGFTSYLKKALDDKGVRTFMDDEELQKGEEITPSLLKAIEDSQIAIVVLSKNYASSSFCLQELSHILHSIKDKGRSVLPVFYKVDPSVIRKLEKSYGEAMDKHKANSNLDKWKVCLHQVADLSGFHYKKKRDMPEHKFIGEIVEKVLGNIEPVALPVGDYKVGLEHQKQHVISLLNVGSDDKACMVGIYGIGGIGKTTLAISVYNLIANEFEVSCFVENVRESHEKHGLPYLQKIILSKVVGEKKELTSVLNGISKLEQMLKQKKILLILDDVNELEQLEALAGKHEWFNRSSRIIITTRDKRLLTCHGIECKYEVKGLNDIDAAELVRRKAFKDEFSPSYKNVSTEKMHVLERVVTYASGHPLALEVMGSHFSNKTIEQCKDALDRYEKIPHKKIQMTLQVSFDALEDEEKFVFLDIACCFKGWKLTRVEEILHVHHGDNMKDHINVLVEKSLIKIDGFGYVALHDLLEDMGKEIVRQESPNNPGERSRLWDPKDIQKVLEENKGTSKIEIIHLDSWVKVEWDGEAFKKMENLKTLIFGNKVYLCENPKHLPNSLRVLECSKLNPLEWEGFLTKKFQNMRVLNLNRSQDLAQIPDISGLLNLEEFSIQYCKTLIAIDKSIGFLGNLKILRIVKCTEIRIIPPLMLPSLEELYLSECSNLENFSPVIDDFGDKLKIMSVRHCIKLRSIPPLKLDSLETLKLSFCHSLESFPLVVEEYLRKLKTMIVTSCRSLRSFPPLKLDSLETLKLSFCHSLESFPLVVEEYLRKLKTMIVTSCRSLRSFPPLKLDSLETLELSNCHSLESFPLVADEYLGKLKTMLVKNCHNLKSIPPLKLDSLETLELSDCHSLESFPLVADEYLGKLKTMLVKNCHNLKSIPPLKLDSLETLELSCCDTLESFPLVVDTFLAKLKTLNVKCCRNLRSIPPLKLDSLETLKLSDCHCLESFPLVVDEYLGKLKTMLVTNCRSLMSITPLKLDSLETLKLSFCHSLESFPLVVEEYLRKLKTMIVTSCRSLRSFPPLKLDSLETLELSDCHSLESFPLVVDEYLGKLKTMLVKNCHNLKSIPPLKLDSLETLELSGCDTLESFPLVVDIFLAKLKTLKVKSCRNLRIIPPLKLDSLETLEFSNCHSLESFPLVVDEYLGKLKTMLVKNCHSLKSIPPLKLDSLETLELSCCDTLESFPLVVDTFLAKLKTLNVKCCRNLRSIPPLKLDSLETLELSDCHSLESFPLVVDEYLGKLKTMLVTNCFSLRSIPPLKLDSLETLDLSCCFSLENFPLVVDGFLGKLKTMLVKNCHNLRSIPPLKLDLLQELDLSNCFMLESFSSVRDELLDKLKFVNIEFCIMLRSIPQLRLTSLKYFNLSCCYSLESFPEILGEMRNIPGLLLDDTPSIESSFQFHNLTQPPTFHPCDCQYDNRSDGNHPKLTIMNEEKVNSMQSSNVKYICVRNAKLSDELLSKTLMLFANVKELHLTNNQLTIIPKSIEKCQFLWKLVLDDCKELHEIKGIPPRLRVLSAVHCISLTSSCKSKLLNQELHEARNTCFRLPRVPKIPKWFDHKCEAGLSISFWFRNKFPAIALCVVSPLTFWFGYHGIRVSINGNSFIYKSNSEICWRQRPDMYHLHLFHMQTENFNDNMDKALLENKWNHAEIYFGVSAFMYSGVHVLKEKNSMEDIRFTNPANDANIVLHSGC* 1711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2050 1710 SUPERFAMILY L domain-like 884 1253 - -
Mtr6g2050 1710 Gene3D Ribonuclease Inhibitor 739 885 IPR032675 -
Mtr6g2050 1710 Gene3D - 6 176 IPR035897 -
Mtr6g2050 1710 Gene3D Ribonuclease Inhibitor 1023 1117 IPR032675 -
Mtr6g2050 1710 Gene3D Ribonuclease Inhibitor 1118 1257 IPR032675 -
Mtr6g2050 1710 Gene3D Ribonuclease Inhibitor 886 1022 IPR032675 -
Mtr6g2050 1710 Gene3D Ribonuclease Inhibitor 1258 1434 IPR032675 -
Mtr6g2050 1710 Gene3D Ribonuclease Inhibitor 532 738 IPR032675 -
Mtr6g2050 1710 Pfam NB-ARC domain 189 421 IPR002182 GO:0043531
Mtr6g2050 1710 ProSiteProfiles TIR domain profile. 10 174 IPR000157 GO:0007165
Mtr6g2050 1710 Pfam TIR domain 11 170 IPR000157 GO:0007165
Mtr6g2050 1710 SUPERFAMILY "Winged helix" DNA-binding domain 418 526 IPR036390 -
Mtr6g2050 1710 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 149 IPR035897 -
Mtr6g2050 1710 PRINTS Disease resistance protein signature 209 224 - -
Mtr6g2050 1710 PRINTS Disease resistance protein signature 284 298 - -
Mtr6g2050 1710 PRINTS Disease resistance protein signature 383 397 - -
Mtr6g2050 1710 PRINTS Disease resistance protein signature 809 825 - -
Mtr6g2050 1710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Mtr6g2050 1710 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 917 IPR044974 GO:0006952
Mtr6g2050 1710 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1214 1672 IPR044974 GO:0006952
Mtr6g2050 1710 SUPERFAMILY L domain-like 533 900 - -
Mtr6g2050 1710 Gene3D - 177 336 IPR027417 -
Mtr6g2050 1710 Gene3D - 343 432 IPR042197 -
Mtr6g2050 1710 PANTHER ARCHAEAL ATPASE 1214 1672 - -
Mtr6g2050 1710 PANTHER ARCHAEAL ATPASE 22 917 - -
Mtr6g2050 1710 SUPERFAMILY L domain-like 1132 1546 - -
Mtr6g2050 1710 SMART till_3 11 146 IPR000157 GO:0007165
Mtr6g2050 1710 Gene3D Ribonuclease Inhibitor 1442 1561 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2050 Mtr-Chr6 37071055 37086648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2050 836 970 WRKY Transcription Factor Family AT4G12020 34.810 7.82e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2050 - - mtr:MTR_6g079000 3391.28