Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2040 ATGGCCGATCAACAATTCTCCTCGACTTCCTATACCTACGATGTGTTCATAAGCTTTGAAGGTTTCGATACTCGTAACGGTTTTACAGGCCATCTCTGGAAAGCTTTGAATGACATAGGAATCCTCGCCTTCATCGATGACACGGAGTTTTCCAGGGGGGAAGAAACCAAACCGGCAATTTTCAAGGCCATTCATGTTTCTCGGATTGCCATTATTGTGTTCTCAGATAACTATGCCGGGTCTAAGTTTCTCTTGGAAGAACTTGCATTTATCGTGGACAACTTTCAGCAGAGTGACAACCTTCGATTTATTGTTCCGGTTTATTACAATATTGAAGCTTCTCATGTGCGACACCAAAGTGGACCTTTTGAAGCTGCATTCGTAAAGCACGAGGAGAGGTTCCATGAAAACAGGGAGAAAGTGCTTAAATGGAAAACCGCTCTATCTCAAGTAGCTAACTTGCCCGGGTGGCATTTCGACGGGGTTGAGTATGAACATCAGTTTCTCCAGAAGATTGTGAAAGAGATCTCCAGGAGGTTGGATCGTGCTCCCTTACACGTTGCCGATTACCCAGTTGGATTGGATTCTCGATTGGGAGAAGTTTTCCGGCATTTGGAGTTGGAATCTCATGAAGTCCTTACGGTGGGGATCTATGGGATTGGCGGAATAGGGAAAACAACACTTGCTCGAGCAGTTTATAATACGATTTCGGATCAATTTGAAACCTCGTGTTTTCTTTCCAATATTAGAAAAAGTTCAAATACACAAAGTTTAGCGCACCTTCAAAATATACTTCTTTCAGAAATGACTGGATTGAAAGATATTCAGTTAAAAGATACTAGTAAAGGAATTTCCGAAATAAAGCACAGGCTCTACCGAAAGAAAGTTCTTCTCATCCTAGATGATGTGGACAGACTAGAGCAAATGGAGGCTTTGGCTGGAGGACTTGATTGGTTTGGTCCTGGTAGCAGAGTTGTCATTACAACACGGGATAGGCATTTGCTAGCATTTCGCGGGGTTGAGAGAAGATACGAAGTACAAGAGTTAAATGACGTAGATGCTCTTGATTTGCTTAGCCACAAGGTTTTTAAACAAGGCATTGTTGATCCAAATTACACAGAACTTTTAAACCGAGCAGTAACTTATGCTTCCGGGCTTCCATTGGCCTTGGAAGTAATAGGTTCAAGCTTGTTTGGATTAAGCGTTGACCAATGTGAACATGCATTAAATCAGTTTAAACGGATTCTTCCTAAGGATATTCAAAAATTACTTAGAGTAAGTTTTGATGCTTTGGATCAAGAGGTAAAGAACATATTTCTTGACATTACTTGTTGCTTCAAAGGATATGCCTTGGCAGACGTCGAGCAGTTACTTTGTGCTCGTTATGGCCACGACATGAAATATCATATTAAAGTGTTGATTGACAAGTCACTCATAAATATTTTAGATGGTAAGGTGACAACAACACATCCCTTGATAGAGAGCATGGGTAAAGAAATTGTTCGTGAGGAATCACCAGAAGATCCTGGGAGACGTAGTAGATTATGGTTCTCTGAAGATATAGTTGAAGTCTTGAAAAATAATAAGGGAACAAGTAGTATTGAAATCATACACTTAGATTCCCCCTTAATTGAAGATGAAGAAGCAATAGAATGGGATGGAAAGGCTTTTAAGGAGATGCCAAACCTCAAAATACTATTATTAGAAAATGTCATTTCTCCACAGCTCCCAAGTATCTTCCAAACAGTTTAA 1752 0.403 MADQQFSSTSYTYDVFISFEGFDTRNGFTGHLWKALNDIGILAFIDDTEFSRGEETKPAIFKAIHVSRIAIIVFSDNYAGSKFLLEELAFIVDNFQQSDNLRFIVPVYYNIEASHVRHQSGPFEAAFVKHEERFHENREKVLKWKTALSQVANLPGWHFDGVEYEHQFLQKIVKEISRRLDRAPLHVADYPVGLDSRLGEVFRHLELESHEVLTVGIYGIGGIGKTTLARAVYNTISDQFETSCFLSNIRKSSNTQSLAHLQNILLSEMTGLKDIQLKDTSKGISEIKHRLYRKKVLLILDDVDRLEQMEALAGGLDWFGPGSRVVITTRDRHLLAFRGVERRYEVQELNDVDALDLLSHKVFKQGIVDPNYTELLNRAVTYASGLPLALEVIGSSLFGLSVDQCEHALNQFKRILPKDIQKLLRVSFDALDQEVKNIFLDITCCFKGYALADVEQLLCARYGHDMKYHIKVLIDKSLINILDGKVTTTHPLIESMGKEIVREESPEDPGRRSRLWFSEDIVEVLKNNKGTSSIEIIHLDSPLIEDEEAIEWDGKAFKEMPNLKILLLENVISPQLPSIFQTV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2040 583 Gene3D - 9 180 IPR035897 -
Mtr6g2040 583 Gene3D - 181 339 IPR027417 -
Mtr6g2040 583 PANTHER NB-ARC DOMAIN PROTEIN 16 581 - -
Mtr6g2040 583 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Mtr6g2040 583 SMART AAA_5 211 349 IPR003593 -
Mtr6g2040 583 SMART till_3 12 154 IPR000157 GO:0007165
Mtr6g2040 583 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Mtr6g2040 583 SUPERFAMILY "Winged helix" DNA-binding domain 419 526 IPR036390 -
Mtr6g2040 583 Gene3D - 348 432 IPR042197 -
Mtr6g2040 583 Pfam NB-ARC domain 198 422 IPR002182 GO:0043531
Mtr6g2040 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 442 IPR027417 -
Mtr6g2040 583 Pfam TIR domain 13 181 IPR000157 GO:0007165
Mtr6g2040 583 PRINTS Disease resistance protein signature 214 229 - -
Mtr6g2040 583 PRINTS Disease resistance protein signature 290 304 - -
Mtr6g2040 583 PRINTS Disease resistance protein signature 383 397 - -
Mtr6g2040 583 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 581 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2040 Mtr-Chr6 36827658 36834922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2040 8 568 WRKY Transcription Factor Family AT4G12020 28.873 1.73e-56 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2040 - - gmx:100814962 619.387