Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2021 ATGGCAGATAACACTGAGGTACATGAAAATTCTTCATCATCTACCCAACAACATGTTAACAAAGCCAACCAAATAGTTCCATTCTACAAGCTCTTTAGTTTTGCTGATCGTCTTGACGTAACTTTGATGATCATTGGCACTATTTCTGCCATGGCTAATGGATTTGCAAGTCCTCTCATGACACTTCTTCTTGGGAAAGTCATCAATGCTTTTGGTTCCTCTAATCAATCAGAAGTTCTCAATCAAGTTTCCAAGGTATCATTGCTATTTGTTTACCTGGCTATTGGGTCTGGAATAACATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAATCTGCGAGGATTCGTAGTTTGTACTTGAAAACCATATTAAAGCAGGATATTGCATTCTTTGACACTGAAACAAACACAGGAGAGGTAATTAGTAGAATGTCTGGTGACACAATTCTCATTCAAGAAGCTATGGGAGAAAAGGTTGGGAAGTTTCTTCAACTTGGTTCAACTTTTTTTGGTGGCTTTGTAATTGCATTTATAAAAGGATGGCGCTTAGCTCTAGTCTTACTCGCATGTGTACCTTGTATTGTTGTTGCCGGTGCTTTCATGGCTATGGTGATGGCTAAAATGGCAATTCGCGGACAAGTTGCTTATGCAGAAGCAGGAAATGTTGCTAATCAAACAGTTGGATCCATGAGAACAGTTGCATCTTTTACTGGTGAGAAAAAAGCCATAGAGAAGTATAATAGCAAGATAAAAATTGCTTATACTGCAATGGTTCAACAAAGCATAGCATCAGGGATAGGAATGGGAACGCTTCTCCTTATTATCTTCTGCTCTTACGGACTTGCCATGTGGTATGGTTCCAAGCTAGTGATTGCGAAAGGATATAATGGCGGAACGGTCATGACTGTGGTCATAGCTCTTGTGACTGGTTCAATGTCATTAGGTCAGACATCCCCAAGCTTACATGCATTTGCTGCAGGCAAAGCAGCAGCATATAAAATGTTTGAGACGATTAAAAGAAAGCCAAAAATCGATGCATATGATACCAGTGGTCTTGTGTTGGAAGATATAAAGGGAGATATTGAACTCAGAGATGTTCACTTCAGATACCCTGCAAGACCAGATGTGGAGATCTTTGCTGGATTCTCATTGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTCGGTCAAAGTGGAAGTGGGAAGTCTACTGTAATCAGTTTACTGGAAAGATTCTATGACCCTAATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAGATGGATACGAGAACAGATTGGACTAGTTAGTCAAGAACCTATCTTGTTTACTACTTCTATCCGAGAGAACATAGCATATGGGAAAGAAGGTGCAACTGATGAGGAGATAACAACAGCAATAACACTTGCTAATGCCAAAAACTTCATCGACAGGCTGCCTCAGGGTCTTGATACAATGGCAGGGCAAAATGGGACTCAACTTTCTGGAGGGCAAAAGCAAAGAATTGCAATTGCTAGGGCAATATTGAAGAACCCTAAAATTCTTCTTCTTGATGAAGCAACAAGTGCGTTGGATGCTGAGTCTGAACATATTGTTCAAGAAGCATTAGAAAAAATTATATTAAAAAGGACTACTATTGTCGTTGCGCATCGTTTGACTACTATCATACATGCTGACACAATCGCAGTGGTTCAACAGGGGAAAATCGTCGAGAGAGGAACTCATAGCGAGTTAACCATGGATCCTCACGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGCTGAAGGTAGCAGAAGTTCTGAAGTAGATAAATCAATAAGCCAAACTTCATCGATGAGTCATCGACATTCCCAGTTGTCTGGAGAAATAGTAGATGCAAATATTGAACAAGGTCAAGTTGATAACAACGAAAAACCTAAAATGTCAATGAAAAATTCTATATGGCGTTTGGCCAAGTTGAACAAGCCGGAGCTTCCTGTCATACTACTTGGAACCATTGCTGCAATGGTAAATGGTGTCGTGTTCCCTATATTTGGCTTCTTGTTTTCAGCAGTCATTAGTATGTTTTATAAACCTCCAGAACAGCAGAGGAAAGAGTCCAGGTTTTGGTCACTTGTATATGTGGGTTTAGGTTTGGTTACACTAGTAGTTTTTCCACTAAAGAATTACTTCTTTGGGACTGCTGGTGGAAAACTTATTGAAAGAATTCGTTCATTGACATTTGCGAAGATTGTGCACCAAGAAATTAGATGGTTTGATGATCCAGCACATTCAAGTGGTGCAGTTGGTGCAAGGTTATCCGTTGACGCATCAACTGTGAAAGGTATTGTTGGCGACAGCTTGTCCCTCCTGGTGCAGAACATAACAACGGTGGTAGCTGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTAGCTTTTATAGTTTTGGCTGTGTCACCTTTGATTCTTATGCAAGGAATGGTTCAAATGAAGTTTCTTAAAGGGTTTAGTGGTGATGCCAAGGTTATGTATGAAGAGGCAAGTCAGGTGGCAAGTGATGCTGTCAGTAGCATCAGAACTGTTGCGTCATTTTGTGCAGAATCAAAGGTGATGGACATGTACGGGAAAAAATGTTCTGGACCAGCGAAACAAGGTGTTCGCTCGGGGCTTGTTAGTGGTGTAGGATTTGGTTTATCTTTTTTAATTCTATATTGCACAAATGCTTTCATCTTCTACATAGGATCTATTTTAGTGCATCACAGGAAAGCAACGTTTGTAGAAATTTTCAGGGTTTTCTTTAGTTTGACAATGACAGCAATGTCTGTTTCCCAGTCTTCTACATTGTTTCCCGACACTAACAAGGCCATAGATTCCGCAGCTTCAATATTTAACATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAATGATGGTGTAACACAAGAAACTGTCGTTGGCAACATCGAACTTCAACACGTCAACTTTAGTTACCCAACAAGACCCGACATTCAAATTTTCAAAGATTTAACCCTAAGCATCCCATCTGCAAAGACTGTTGCTTTGGTTGGAGAAAGCGGCAGTGGAAAATCAACAGTTATCAGCCTCTTAGAGAGATTTTATGACCCTAATTCCGGACGCGTATTACTAGATGGAGTGGATATCAAAACTTTCAGAATAAGCTGGTTGAGACAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGCGCCAACATAGCTTATGGTAAAGAAGATGGTGCTACGGAGGATGAGATCATAGCAGCAGCGAACGCAGCCAATGCACACAACTTCATAAGTTCTCTTCCTGATGGTTATGACACTTCTGTTGGCGAAAGAGGCACACAACTATCTGGAGGACAGAAGCAGCGCATTGCGATTGCAAGAGCCATGCTGAAAAACCCTAAAATACTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCCGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGATAGAGTGAGTTTGAACAGAACTACTGTCATCGTGGCTCATCGTCTTACAACAATTCGAGGCGCTGATACTATAGCAGTAATAAAAAATGGGATGGTTGCTGAAAAGGGAAGACATGATGAGTTGATGAACAATACTCATGGTGTTTATGCTTCATTAGTAGCTCTTCATTCAACTGCATCATAA 3726 0.4055 MADNTEVHENSSSSTQQHVNKANQIVPFYKLFSFADRLDVTLMIIGTISAMANGFASPLMTLLLGKVINAFGSSNQSEVLNQVSKVSLLFVYLAIGSGITSFLQVSCWMVTGERQSARIRSLYLKTILKQDIAFFDTETNTGEVISRMSGDTILIQEAMGEKVGKFLQLGSTFFGGFVIAFIKGWRLALVLLACVPCIVVAGAFMAMVMAKMAIRGQVAYAEAGNVANQTVGSMRTVASFTGEKKAIEKYNSKIKIAYTAMVQQSIASGIGMGTLLLIIFCSYGLAMWYGSKLVIAKGYNGGTVMTVVIALVTGSMSLGQTSPSLHAFAAGKAAAYKMFETIKRKPKIDAYDTSGLVLEDIKGDIELRDVHFRYPARPDVEIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPNAGEVLIDGVNLKNLQLRWIREQIGLVSQEPILFTTSIRENIAYGKEGATDEEITTAITLANAKNFIDRLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESEHIVQEALEKIILKRTTIVVAHRLTTIIHADTIAVVQQGKIVERGTHSELTMDPHGAYSQLIRLQEGEKEAEGSRSSEVDKSISQTSSMSHRHSQLSGEIVDANIEQGQVDNNEKPKMSMKNSIWRLAKLNKPELPVILLGTIAAMVNGVVFPIFGFLFSAVISMFYKPPEQQRKESRFWSLVYVGLGLVTLVVFPLKNYFFGTAGGKLIERIRSLTFAKIVHQEIRWFDDPAHSSGAVGARLSVDASTVKGIVGDSLSLLVQNITTVVAGLVIAFTANWILAFIVLAVSPLILMQGMVQMKFLKGFSGDAKVMYEEASQVASDAVSSIRTVASFCAESKVMDMYGKKCSGPAKQGVRSGLVSGVGFGLSFLILYCTNAFIFYIGSILVHHRKATFVEIFRVFFSLTMTAMSVSQSSTLFPDTNKAIDSAASIFNILDSKPDIDSSSNDGVTQETVVGNIELQHVNFSYPTRPDIQIFKDLTLSIPSAKTVALVGESGSGKSTVISLLERFYDPNSGRVLLDGVDIKTFRISWLRQQMGLVGQEPILFNESIRANIAYGKEDGATEDEIIAAANAANAHNFISSLPDGYDTSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDRVSLNRTTVIVAHRLTTIRGADTIAVIKNGMVAEKGRHDELMNNTHGVYASLVALHSTAS* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2021 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 981 - -
Mtr6g2021 1241 Pfam ABC transporter 386 532 IPR003439 GO:0005524
Mtr6g2021 1241 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Mtr6g2021 1241 SUPERFAMILY ABC transporter transmembrane region 30 349 IPR036640 GO:0005524|GO:0016021
Mtr6g2021 1241 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Mtr6g2021 1241 SUPERFAMILY ABC transporter transmembrane region 664 980 IPR036640 GO:0005524|GO:0016021
Mtr6g2021 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Mtr6g2021 1241 SMART AAA_5 392 578 IPR003593 -
Mtr6g2021 1241 SMART AAA_5 1025 1218 IPR003593 -
Mtr6g2021 1241 Pfam ABC transporter transmembrane region 43 316 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g2021 1241 Pfam ABC transporter transmembrane region 677 949 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g2021 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g2021 1241 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
Mtr6g2021 1241 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 10 1238 - -
Mtr6g2021 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 325 - -
Mtr6g2021 1241 Gene3D ABC transporter type 1, transmembrane domain 30 968 IPR036640 GO:0005524|GO:0016021
Mtr6g2021 1241 MobiDBLite consensus disorder prediction 605 626 - -
Mtr6g2021 1241 Gene3D - 355 604 IPR027417 -
Mtr6g2021 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g2021 1241 Gene3D - 988 1240 IPR027417 -
Mtr6g2021 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Mtr6g2021 1241 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Mtr6g2021 1241 CDD ABC_MTABC3_MDL1_MDL2 998 1234 - -
Mtr6g2021 1241 PANTHER - 10 1238 - -
Mtr6g2021 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1235 IPR027417 -
Mtr6g2021 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 998 1235 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2021 Mtr-Chr6 36680194 36686200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2021 26 1237 Calmodulin-binding Proteins AT2G36910 44.346 0.0 1055