Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2007 ATGTCTTCCACCGGCGACAACCCCACCGTCCCCACCGCCACCAACTCCGACGACCTCCGTCGTTACTTCTGCCACCAGTGCGAACGCACCTCCCTCATCTCCACCACCTCCACCGATCTCATCTGCCCCAATTGCAACTCCTCTTTCATCGAAGAACTTGAATCCCCAATTCCTAACCCTAACCCTAATCCTCTCCCTCCGTTCTTCTCCCACACCACCGAATTCCCTGCCGGAGGTTTCTCCTTTCCAATGCTTTTCTCCGGTAACGGTGCTCCCACCGCCACAGCTACCGGCGCTGGTGCTGGTGCTGGTTCTCTACCACCGTTCAATGATCTCCCTGCTTTTTTTCAAACATCGCCGTCGATGTCACCGCCATCGCCTTCGCCTTTCGGAGAAGCTTTTAACCCGATGGCGTTTATTCAAAATTATCTCCGTAACATGAATGCTGGTGGAGGAGGAGGAGGAGGAATTCAGTTCGTGATCAACGACGGCGATGAGCCAGGTCGGTTTCGGTTTCCTGGGTTTCCCGGTAACGCGAATCTAGGTGATTACTTCTTTGGTCCAGGGCTTGAGGATCTGATTCAGCAATTGGCGGAGAATGATCCGAATCGGAGGGGGACGCCGCCTGCGTCAAAGTCTGCTGTTGAGAAGCTGCCGGTGATTGAGGTGACGGGGGAGTTGCTGGAATCGGATTCGTCGCAGTGTGCTGTGTGTAAAGACACATTTGCCCTTGGTGAAAAGGCGAAGCAGATGCCGTGTAAGCACATATATCATGATGATTGTATCTTGCCGTGGTTGGAATTGCATAATTCTTGTCCTGTTTGTCGTTTTGAGTTGCCTACAGATGATCCTGATTATGAGCAGCGGGCTCGTGGCGGTGGTGGCGGTGGAGGAGGAGCTGGTAATGGTGGTGGTTCTGGTGGTGGTGGAGATGATTCAGTGAGGACAAGGTTTAGGGTTTCTTTGCCGTTGTTCCGGCATGTACCTTCGTCTTCTGGTGCTGCTGCAGGGACAAGTAATGTTGAGGGTGTGAATAACAATGATAGCAGTAGTGGACAACCCAATGCTGAGAATAGGGGGAATCAGAATTTTGAGTCAGAGACTAGACAAGAAGATCTTGATTGA 1125 0.5209 MSSTGDNPTVPTATNSDDLRRYFCHQCERTSLISTTSTDLICPNCNSSFIEELESPIPNPNPNPLPPFFSHTTEFPAGGFSFPMLFSGNGAPTATATGAGAGAGSLPPFNDLPAFFQTSPSMSPPSPSPFGEAFNPMAFIQNYLRNMNAGGGGGGGIQFVINDGDEPGRFRFPGFPGNANLGDYFFGPGLEDLIQQLAENDPNRRGTPPASKSAVEKLPVIEVTGELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHDDCILPWLELHNSCPVCRFELPTDDPDYEQRARGGGGGGGGAGNGGGSGGGGDDSVRTRFRVSLPLFRHVPSSSGAAAGTSNVEGVNNNDSSSGQPNAENRGNQNFESETRQEDLD* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2007 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 15 329 - -
Mtr6g2007 374 SMART ring_2 235 275 IPR001841 -
Mtr6g2007 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 329 - -
Mtr6g2007 374 MobiDBLite consensus disorder prediction 286 374 - -
Mtr6g2007 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 282 IPR013083 -
Mtr6g2007 374 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Mtr6g2007 374 Pfam Ring finger domain 234 276 IPR001841 -
Mtr6g2007 374 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Mtr6g2007 374 MobiDBLite consensus disorder prediction 332 363 - -
Mtr6g2007 374 CDD RING-H2_RNF126_like 234 276 - -
Mtr6g2007 374 SUPERFAMILY RING/U-box 215 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2007 Mtr-Chr6 36515227 36521965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2007 176 291 C3H Transcription Factor Family AT5G01980 50.000 2.13e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2007 K11982 - mtr:MTR_6g079660 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2007 6 36515227 36521965 Mtr6g2007 6 36515227 36521965 ECH