Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1988 ATGGCTGACGCTCATGATACTGATAAGAACATTGAGGTGTGGAAAATCAAGAAATTGATCAAGGCTCTTGAAGCTGCCAGAGGAAATGGGACGAGTATGATTTCTCTTATCATGCCCCCACGTGATCAAATTGCTCGTGTTACTAAGATGCTTGGCGATGAGTTTGGAACTGCTTCAAACATCAAGAGTAGGGTGAATCGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTCCCTCCAAACGGGCTTGTTTTGTATACTGGTACAATTGTGACTGATGATGGTAAGGAGAAAAAGGTGACCATTGATTTTGAACCATTTAGACCTATCAACGCGTCTCTCTATCTTTGTGACAACAAGTTTCACACTGAAGCTCTCAATGAGCTATTGGAATCTGATGACAAGTTTGGATTTATTGTCATGGACGGTAATGGCACATTGTTCGGGACCTTGAGTGGTAATACAAGAGAGGTGCTTCACAAGTTCAGTGTCGATCTTCCAAAGAAACATGGAAGAGGAGGGCAATCTGCCCTGCGTTTTGCTCGTCTTCGCATGGAGAAGCGTCATAACTACGTGAGGAAGACTGCTGAGCTTGCAACCCAGTTTTATATCAATCCTGCTACCAGCCAGCCTAATGTGGCTGGATTAATTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCCCGTCTTCAGGCAAAAATACTTAATGTTGTAGATGTATCTTATGGAGGTGAGAATGGGTTTAATCAGGCTATTGAACTATCTTCTGAAATTCTGTCCAATGTCAAGTTCATTCAGGAGAAACGCTTGATTGGAAAATACTTTGAGGAAATCAGTCAGGATACTGGGAAGTATGTCTTTGGTGTTGATGATACACTTCAAGCTCTGGATGCTGGAGCTGTTGAGACACTAATTGTCTGGGAAAATCTGGATATGAATAGGTATGTTTTAAAAAATAGTACTACTGGTGAAGTTGTCATTAAGCACTTCAACAAGGAGCAGGAAGCCAAGCAGAGCAATTTTAGAGATCCTGAAACTGCTGCTGATTATGAGGTTCAGGAAAAGACGTCTCTGTTGGACTGGTTTGCAAATGAATACAGACGGTTTGGTTGCACGCTCGAGTTTGTCACCAATAAATCACAAGAAGGCTCACAGTTTTGCAGGGGTTTTGGTGGGATAGGTGGGATCTTGCGCTACCAGCTTGATATGAGAACATTTGATGATTTTTCTGATGATGGAGGCGTGTATGAAGACGAATAG 1311 0.4241 MADAHDTDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLQALDAGAVETLIVWENLDMNRYVLKNSTTGEVVIKHFNKEQEAKQSNFRDPETAADYEVQEKTSLLDWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDGGVYEDE* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1988 436 Gene3D eRF1 domain 1 2 135 IPR024049 -
Mtr6g1988 436 SMART eRF1_1_2 4 140 IPR005140 -
Mtr6g1988 436 Gene3D eRF1 domain 2 136 277 IPR042226 -
Mtr6g1988 436 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 435 - -
Mtr6g1988 436 Pfam eRF1 domain 1 18 138 IPR005140 -
Mtr6g1988 436 SUPERFAMILY Translational machinery components 142 276 - -
Mtr6g1988 436 Gene3D - 279 436 IPR029064 -
Mtr6g1988 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Mtr6g1988 436 Pfam eRF1 domain 3 281 418 IPR005142 -
Mtr6g1988 436 Pfam eRF1 domain 2 144 277 IPR005141 -
Mtr6g1988 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 435 IPR004403 GO:0003747|GO:0006415
Mtr6g1988 436 SUPERFAMILY L30e-like 278 420 IPR029064 -
Mtr6g1988 436 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 13 417 IPR004403 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1988 Mtr-Chr6 36259232 36263941 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1988 1 435 Eukaryotic Initiation Factors Gene Family AT3G26618 89.425 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1988 K03265 - gmx:100785916 825.469