Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1981 ATGAGAAGATATCGTTCCCCGTTGTCTAGCAATGAAGATGATACTAAGACAATGATGAACAATGAAGTTCTTGTTCAAGAATCAACATACAAATGCAAAACTTGTGGTAAGACTTTCAGCAATGGAAAAACATTAGGTGGTCACCGAAGATCTCACTTTCTCAAGATGAAGCGTAATCATCATCAATCACAAGGTAATGCTTATTTCAATGATGATAGTTATGATGATGAAGAAATCGCTGGCAAAAAGAAACAAACTTGTTATATTTGCGAGAACAAGTTTCCAATCAAGAATGTTTTTTATGGTCACATGATCAGATCTCATCTTGATGTGGTTTCTAAAGGAGTTAGTCCTCCTTCAAATTATGATATTCAAAAATCTTTTTCATCTAACAGTTCTAAATATTCTACTCAACAGAATAAAGAAGATAATCTTTCTTTACCAAAATGGCAAAATAGAGGTAAAAGAGGAAGAAAATGTATTGGTGTTGTTGAGGGTGCTACAAATCTTTTACATCTTATGTCTAATAAGTACTTTTGTACTTTGTCGATTGATGAGCAAAAGAGTCCTGAATTTCCCCTTCCGATTAAGAAAAGATATTGTTCTGTTGACGAGTCATCATCAAATGGGAATGGAAAGAAGGAACTTATTGTGAACAAGAATAGTTTCGTTTTGGGTTGTTCATTGAAGATTGAAAACAAATGTGATGGTAATGGTGATGAGAGTGACAACAATGATGAAGAGAAAAGTAATGATGCCGCTACTGAACAAAATAAATTGAATTTTGATTTGAATGATTCATATCTTGTGGAGGAGTAA 819 0.3321 MRRYRSPLSSNEDDTKTMMNNEVLVQESTYKCKTCGKTFSNGKTLGGHRRSHFLKMKRNHHQSQGNAYFNDDSYDDEEIAGKKKQTCYICENKFPIKNVFYGHMIRSHLDVVSKGVSPPSNYDIQKSFSSNSSKYSTQQNKEDNLSLPKWQNRGKRGRKCIGVVEGATNLLHLMSNKYFCTLSIDEQKSPEFPLPIKKRYCSVDESSSNGNGKKELIVNKNSFVLGCSLKIENKCDGNGDESDNNDEEKSNDAATEQNKLNFDLNDSYLVEE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1981 272 MobiDBLite consensus disorder prediction 235 272 - -
Mtr6g1981 272 SUPERFAMILY beta-beta-alpha zinc fingers 29 105 IPR036236 -
Mtr6g1981 272 MobiDBLite consensus disorder prediction 127 147 - -
Mtr6g1981 272 MobiDBLite consensus disorder prediction 127 149 - -
Mtr6g1981 272 Pfam C2H2-type zinc finger 30 52 - -
Mtr6g1981 272 Gene3D Classic Zinc Finger 5 110 - -
Mtr6g1981 272 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 22 253 - -
Mtr6g1981 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Mtr6g1981 272 PANTHER ZINC FINGER PROTEIN ZAT5 22 253 - -
Mtr6g1981 272 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Mtr6g1981 272 SMART c2h2final6 85 108 IPR013087 -
Mtr6g1981 272 SMART c2h2final6 30 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1981 Mtr-Chr6 36187257 36188075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1981 30 108 C2H2 Transcription Factor Family AT3G60580 36.709 5.05e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr6g1981 zf-C2H2_6 4.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1981 - - mtr:MTR_6g081160 545.428