Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1980 ATGGCTATGCAATCACCTCCCTCTTCCTCTTCATTTTCATATGCATTCACTTACCAAGTGTTCCTTAGTTTTAGGGGCACTGACACTCGCCACGGTTTTACCGGCAATCTCTACAAGGCTCTTACTGACAAGGGAATCAAAACCTTCATTGATGACAATGATCTTCAAAGAGGAGATGAAATCACACCATCACTCCTCAAGGCCATCGAAGAATCTAGGATTTTTATTCCTGTGTTTTCTATCAACTACGCCACTTCAAAATTTTGCTTGGACGAACTTGTTCACATTATTCATTGCTACAAGACAGAAGGTCGCCTCGTTTTGCCTGTTTTCTTTGGTGTGGATCCTACTAATGTGCGACATCATACAGGTCGTTATGGTGAAGCATTGGCTGGACATGAAAAGAGGTTTCAAAATGATAAGAATAACATGGAGCGATTGCATCAATGGAAGTTGGCTCTGACCCAAGCTGCTAACTTGTCCGGCTACCATTCTAGTCATGGATATGAATACAAGTTTATTGGCGATATAGTCAAATACATCTCCAACAAGATCAGTCGTCAGCCCTTACATGTTGCCAATTACCCTGTTGGATTACAGTCTCGAGTACAACATGTGAAATCGCTTCTTGATGAAGGATCTGATGATGGAGTCCACATGGTAGGACTTTATGGTACTGGAGGCTTGGGTAAATCAACACTTGGAAAAGCAATTTATAATTTTATTTCTGATCAATTTGAATGCTCATGTTTTCTTGAAAATGTGAGAGAGAATTCAGCTTCAAATAAATTGAAACATCTCCAGGAGGAACTCCTTTTAAAAACACTTCAACAGAAAACTAAGTTAGGAAGTGTTAGTGAGGGAATTCCTTATATAAAGGAAAGGCTGCATACAAAGAAGACTCTTTTGATTCTCGATGATGTTGACGATATGAAGCAACTACATGCTTTGGCAGGAGGACCTGATTGGTTCGGCCGTGGAAGCAGGGTCATCATTACCACTCGAGACAAACACTTACTAAGAAGTCATGGGATAAAAAGTACGCATGAAGTGAAAGGGCTGTATGGAACAGAAGCTCTTGAGTTGTTGAGATGGATGGCTTTTAAGAATAACAAAGTACCTTCAAGTTATGAAGACGTTTTAAATCGTGCAGTTTCATATGCTTCGGGCCTTCCCTTAGTTTTAGAAATAGTGGGTTCCAACTTGTTTGGAAAGACGATAGAAGAATGGAAGGGTACATTAGATGGATATGAAAAGATTCCCAATAAAAAGATCCACGAGATACTTAAAGTAAGTTATGATGCTTTGGAGGAAGAGCAGCAAAGTGTTTTTCTAGACATTGCCTGTTGCTTCAAAGGATGTGGATGGAAGGAGTTTGAAGATATACTACGTGCTCATTATGGCCATTGCATAAAACATCATCTAGGAGTGTTGGCTGAAAAATCTCTCGTTAAGATTAGTAGTACTTCTTATTCGGGATCTATTAATCATGTGACATTACATGACTTTATAGAGGACATGGGTAAAGAAGTCGTACGACAAGAATCGCCTAAAGAGCCAGGAGAAAGAAGTAGGTTATGGTGTCAAGATGATATAGTTAATGTTTTAAAAGAAAACACTGGAACTAGAAAAATTGAAATGATATATATGAATTTCCCCTCTGAGGAATTCGTAATAGACAAGAAAGGAAAGGCCTTCAAGAAGATGACAAGACTGAAAACGCTTATCATTGAAAATGTCCATTTTTCTAAAGGTCTCAAGTATCTTCCAAGCAGTTTGAGAGTATTGAAATTACGTGGATGTTTATCAGAGTCTCTATTATCATGTAGTTTAAGCAAGAAGTTCCAGAACATGAAAATCTTGACATTGGACAGGTGTGAATATTTAACCCATATACCTGATGTCTCAGGTCTTCAAAATTTAGAAAAGTTCTCCTTTGAATATTGTGAGAATTTAATTACAATTCACAATTCAATTGGACACCTCAATAAACTTGAAAGGTTAAGTGCAAATGGTTGCAGCAAACTCGAACGTTTTCCACCTTTAGGGCTTGCATCCCTTAATGAATTGAATATCTCTTATTGTGAGAGTCTCAAGAGTTTTCCAAAATTATTATGCAAGATGACAAATATGAAAACGATTTGGTTGCAGAAAACTTCCATAAGAGAATTGCCATCTTCATTTCAAAATCTCAATGAACTTTTTCAGTTAACGCTATGGGAATGTGGAATGCTGAGGTTCCCAAAACAGAATGATCAAATGTATTCTATAGTGTTTTCAAAAGTGACAAATCTTGTTCTCAATAATTGCAAGCTCTCAGATGAATGTCTCCCAATATTTCTCAAGTGGTGTGTTAATGTGAAATTGCTAGACTTATCAAGGAACAATTTCAAACTTATTCCTGAGTGCCTTAGTGAATGTCACCTTCTTAATAACCTTATATTGGATAACTGCAAGTCTCTGGAGGAAATTAGAGGGATTGCACCAAATCTTGAAAGGCTTTCTGCAATGGGATGCAAATCATTGAGTTCCTCAAGTAGAAGAATGCTATTGAGTCAGAAGCTAAATGAGGCTGGATGCATTATTTCTTTCCCAAACTTCAGTGATGGGATTCCAGATTGGTTCGAGCACCAAAGCAGGGGAGACACAATTTCTTTCTGGTTTCGTAAAAAGATCCCTTCTAATATTTCTGTTATTCTTTTTCCGGGATGTATGTCTACTCCACAACTTTGTTTGTTTGTCAATGGCTATAAATGTTTTCCTTGTAATTATTTACTCTGGGGTTTTGTTTTATTTGAGATTTTGGAGTCAGAACATTCATTTTTGTTTAATCTGAAATTGGAAGAAGAGATTACACATTTGTGTCGCCTGTCTGAAATGGACGAAGCAATTTTAAGAAATGAATGGATCCATGTGGAGCTTAATTTTGTAAAGAATGTTTGGAATAAATCGATCCATGTGACTGAAAAATTAAGCAGTGCGCAAATAGGAATCCACGTGAGGATGGAGAAAAGCAACGCAGAGGAGAATGTGATATTCACCGATCCTCATAGAGGATGTAGAAATACTTCATTATCACAATTTGAGCCTCCTCTGAAAAAGCAAAGATTGGTGGAAGTGGTAGTTTCAGAGACAGAAATTTGGCAGCAGCAATATCTAGCTTTAGTGTCAGGCATGCAAAACTTGGTGCTTACTGAAACAAAAGAGGAACACCATTGCTAG 3222 0.3762 MAMQSPPSSSSFSYAFTYQVFLSFRGTDTRHGFTGNLYKALTDKGIKTFIDDNDLQRGDEITPSLLKAIEESRIFIPVFSINYATSKFCLDELVHIIHCYKTEGRLVLPVFFGVDPTNVRHHTGRYGEALAGHEKRFQNDKNNMERLHQWKLALTQAANLSGYHSSHGYEYKFIGDIVKYISNKISRQPLHVANYPVGLQSRVQHVKSLLDEGSDDGVHMVGLYGTGGLGKSTLGKAIYNFISDQFECSCFLENVRENSASNKLKHLQEELLLKTLQQKTKLGSVSEGIPYIKERLHTKKTLLILDDVDDMKQLHALAGGPDWFGRGSRVIITTRDKHLLRSHGIKSTHEVKGLYGTEALELLRWMAFKNNKVPSSYEDVLNRAVSYASGLPLVLEIVGSNLFGKTIEEWKGTLDGYEKIPNKKIHEILKVSYDALEEEQQSVFLDIACCFKGCGWKEFEDILRAHYGHCIKHHLGVLAEKSLVKISSTSYSGSINHVTLHDFIEDMGKEVVRQESPKEPGERSRLWCQDDIVNVLKENTGTRKIEMIYMNFPSEEFVIDKKGKAFKKMTRLKTLIIENVHFSKGLKYLPSSLRVLKLRGCLSESLLSCSLSKKFQNMKILTLDRCEYLTHIPDVSGLQNLEKFSFEYCENLITIHNSIGHLNKLERLSANGCSKLERFPPLGLASLNELNISYCESLKSFPKLLCKMTNMKTIWLQKTSIRELPSSFQNLNELFQLTLWECGMLRFPKQNDQMYSIVFSKVTNLVLNNCKLSDECLPIFLKWCVNVKLLDLSRNNFKLIPECLSECHLLNNLILDNCKSLEEIRGIAPNLERLSAMGCKSLSSSSRRMLLSQKLNEAGCIISFPNFSDGIPDWFEHQSRGDTISFWFRKKIPSNISVILFPGCMSTPQLCLFVNGYKCFPCNYLLWGFVLFEILESEHSFLFNLKLEEEITHLCRLSEMDEAILRNEWIHVELNFVKNVWNKSIHVTEKLSSAQIGIHVRMEKSNAEENVIFTDPHRGCRNTSLSQFEPPLKKQRLVEVVVSETEIWQQQYLALVSGMQNLVLTETKEEHHC* 1074
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1980 1073 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Mtr6g1980 1073 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Mtr6g1980 1073 Gene3D - 183 347 IPR027417 -
Mtr6g1980 1073 PRINTS Disease resistance protein signature 220 235 - -
Mtr6g1980 1073 PRINTS Disease resistance protein signature 295 309 - -
Mtr6g1980 1073 PRINTS Disease resistance protein signature 388 402 - -
Mtr6g1980 1073 PRINTS Disease resistance protein signature 682 698 - -
Mtr6g1980 1073 PANTHER ARCHAEAL ATPASE 28 977 - -
Mtr6g1980 1073 Gene3D - 354 437 IPR042197 -
Mtr6g1980 1073 SMART till_3 17 160 IPR000157 GO:0007165
Mtr6g1980 1073 Pfam NB-ARC domain 201 435 IPR002182 GO:0043531
Mtr6g1980 1073 Pfam TIR domain 18 186 IPR000157 GO:0007165
Mtr6g1980 1073 Gene3D - 15 182 IPR035897 -
Mtr6g1980 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Mtr6g1980 1073 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 977 IPR044974 GO:0006952
Mtr6g1980 1073 SUPERFAMILY L domain-like 514 876 - -
Mtr6g1980 1073 Gene3D Ribonuclease Inhibitor 535 682 IPR032675 -
Mtr6g1980 1073 Gene3D Ribonuclease Inhibitor 683 867 IPR032675 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr6g1980 Mtr-Chr6 36169228 36177260 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1980 12 815 WRKY Transcription Factor Family AT4G12020 28.386 2.01e-68 250
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1980 - - mtr:MTR_6g478020 1535.01