Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1979 ATGGCTATACAATCACCTTCCTCATCCTCTTCATTTTCCTATGGATTCACTTACCAAGTGTTCCTCAGTTTTAGGGGCATTGACACTCGCCACGGTTTTACCGGAAATCTCTACAAGGCTCTTACTGACAAGGGAATCAAAACCTTCATTGATGACAATGATCTTCAAAGAGGAGATGAAATCACACCATCCCTCCGCAAGGCCATTGATGAATCTAGGATTTTTATTCCTGTGTTTTCTATCTTCTATGCCTCTTCTTCGTTTTGTTTGGACGAACTTGTCCACATAATTCACTGCTACAAGACAAAGGGTCGCCTCGTTTTGCCTGTTTTCTTCGGCGTGGAACCTACTAACGTGCGACATCTGAAAGGTAGTTATGGTGAAGCATTGGCTGAGCATGAAAAGAGGTTTCAAAATGATAAGAATAACATGGAGAGGTTGCATCAATGGAAGTTGGCTCTGACCCAAGCTGCTAACTTGTCCGGCTACCATTCTAGTCATGGATATGAATACAAGTTTATTGGAGAGATAGTCAAGAACATCTCCAACAAGATCAGTCATCAGCCCTTACATGTTGCCAATTACCCTGTTGGATTACAGTCTCGAGTACAACATGTGAAATCGCTTCTTGATGAAGGATCTGATCATGGAGCCCACATGGTAGGACTTTATGGTACTGGAGGCTTGGGTAAATCAACACTTGGAAAAGCAATTTATAATTTTATTGCTGATGAATTTGAATGCTCATGTTTTCTTGAAAATGTGAGAGAGAATTCAGCTTCAAATAAATTGAAACATCTCCAGGAGGAGCTCCTTTTAAAAACACTTCAACTTGAAATTAAGTTAGGAGGTGTTAGTGAGGGAATTTCTCATATAAAGGAAAGGCTGCATTCAAAGAAGATTCTTTTGATTCTCGATGATGTTGACGATATGGAGCAACTACAGGCTTTGGCAGGAGAACCTGATTGGTTTGGCCTTGGAAGCAGGGTCATCATTACCACTCGAGACAAACACTTGCTAAGAAGTCATGGGATAGAAAGTACGCATGAAGTGGAAGGGCTGTATGGGACAGAAGCTCTTGAGTTGTTGAGATGGATGGCTTTTAAGAATAACAAAGTCCCTTCAAGTTATGAAGACGTTTTAAATCGTGCAGTTTCATATGCTTCGGGCCTTCCCTTAGTTTTAGAAATAGTGGGTTCCAACTTGTTTGGAAAGACGATAGAAGAATGGAAGGGTACATTAGATGGATATGAAAAGATTCCCAATAAAAAGATCCACGAGATACTTAAAGTAAGCTATGATGCTTTGGAGGAAGAGCAGCAAAGTGTTTTTCTAGACATTGCCTGTTGCTTCAAAGGATGTGGATGGAAGGAGTTTGAATATATACTTCGTGCTCATTATGGCCATCGCATAACACATCATCTAGTAGTGTTGGCTGAAAAATCTCTCGTTAAGATTACTCATCCCCATTATGGATCTATTAATGAACTGACACTACATGACTTGATAAAGGAAATGGGTAAAGAAGTCGTCCGACAAGAATCGCCCAAAGAGCCTGGAGAAAGAAGTAGATTATGGTGTGAAGATGATATAGTTAATGTTTTAAAAGAAAACACTAAGTTCCAGAACATGAAAATCTTGACATTGGACAGGTGTGAATATTTAACCCATATACCTGATGTCTCAGGTCTTCAAAATTTAGAAAAGTTCTCCTTTGAATATTGTGAGAATTTAATTACAATTCACAATTCAATTGGACACCTCAATAAACTTGAAAGGTTAAGTGCAAATGGTTGCAGCAAACTCGAACGTTTTCCACCTTTAGGGCTTGCATCCCTTAATGAATTGAATATCTCTTATTGTGAGAGTCTCAAGAGTTTTCCAAAATTATTATGCAAGATGACAAATATGAAAATGATTTGGTTGCAGAAAACTTCCATAAGAGAATTGCCATCTTCATTTCAAAATCTCAATGAACTTTTTCTGTTAACGCTATGGGAATGTGGAATGCTGAGGTTCCCAAAACAGAATGATCAAATGTATTCTATAGTGTTTTCAAAAGTGACAAATCTTATTCTCCATGATTGCAAGCTCTCAGATGAATGTCTCCCAATATTTCTCAAGTGGTGTGTTAATGTGACATCTCTAGACTTATCATATAACAATTTCAAACTTATTCCTGAGTGCCTTAGTGAATGTCACCTTCTTAATATCCTTATATTGGATAACTGCAAGTCTCTGGAGGAAATTAGAGGGATTCCACCAAATCTTGAAATGCTTTCTGCAATGGGATGCAAATCATTGAGTTCTTCAAGTAGAAGAATGCTATTGAGTCAGAAGCTACATGAGGCTGGATGCATTCTTTTTCGTTTCCCAAACTTCAGTGATGGGATTCCAGATTGGTTCGAGCACCAAAGCAGGGGAGACACAATTTCTTTCTGGTTTCGTAAAAAGATCCCTTCTAATATTTCTATTATTCTTTTTCCGGGATGTACTTGTAGTCCAAAAGTCGATGTGATTGTCAATGGATATAAATGTTTTCCTTGTAGTTATTTATTCTGGGGTTTTGATTCAATTGAGATTTTGGAGTTAGAACATTCATTTTTGTTGAATCTGAAATTGAAACAACAGATTTCACTTTTGGGTCGCATGTCTGAAATGGAAAAAGCACTTTTAAAAAATGAATGGATCCATGTGGAACTTAATTTTGTAAAGAATGTTTGGAATAAAGGGATCCAAGTGATTGAAAAACTAAGCAGTGCACAAATGGGAATCCACGTGAGGATGGAGAAAAGCAACGCAGAGGAGAACGTGATATTCACCGATCCTCATAGAGAATATAGAAATACTTCATTATTACAATTTGAGCCTCCTCTGAAAAAGCAAAGATTGGTGGAAGTGGTAGTTTCAGACACAGAAATTTGA 2925 0.3795 MAIQSPSSSSSFSYGFTYQVFLSFRGIDTRHGFTGNLYKALTDKGIKTFIDDNDLQRGDEITPSLRKAIDESRIFIPVFSIFYASSSFCLDELVHIIHCYKTKGRLVLPVFFGVEPTNVRHLKGSYGEALAEHEKRFQNDKNNMERLHQWKLALTQAANLSGYHSSHGYEYKFIGEIVKNISNKISHQPLHVANYPVGLQSRVQHVKSLLDEGSDHGAHMVGLYGTGGLGKSTLGKAIYNFIADEFECSCFLENVRENSASNKLKHLQEELLLKTLQLEIKLGGVSEGISHIKERLHSKKILLILDDVDDMEQLQALAGEPDWFGLGSRVIITTRDKHLLRSHGIESTHEVEGLYGTEALELLRWMAFKNNKVPSSYEDVLNRAVSYASGLPLVLEIVGSNLFGKTIEEWKGTLDGYEKIPNKKIHEILKVSYDALEEEQQSVFLDIACCFKGCGWKEFEYILRAHYGHRITHHLVVLAEKSLVKITHPHYGSINELTLHDLIKEMGKEVVRQESPKEPGERSRLWCEDDIVNVLKENTKFQNMKILTLDRCEYLTHIPDVSGLQNLEKFSFEYCENLITIHNSIGHLNKLERLSANGCSKLERFPPLGLASLNELNISYCESLKSFPKLLCKMTNMKMIWLQKTSIRELPSSFQNLNELFLLTLWECGMLRFPKQNDQMYSIVFSKVTNLILHDCKLSDECLPIFLKWCVNVTSLDLSYNNFKLIPECLSECHLLNILILDNCKSLEEIRGIPPNLEMLSAMGCKSLSSSSRRMLLSQKLHEAGCILFRFPNFSDGIPDWFEHQSRGDTISFWFRKKIPSNISIILFPGCTCSPKVDVIVNGYKCFPCSYLFWGFDSIEILELEHSFLLNLKLKQQISLLGRMSEMEKALLKNEWIHVELNFVKNVWNKGIQVIEKLSSAQMGIHVRMEKSNAEENVIFTDPHREYRNTSLLQFEPPLKKQRLVEVVVSDTEI* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1979 974 SUPERFAMILY "Winged helix" DNA-binding domain 423 536 IPR036390 -
Mtr6g1979 974 Pfam NB-ARC domain 201 435 IPR002182 GO:0043531
Mtr6g1979 974 Gene3D - 15 182 IPR035897 -
Mtr6g1979 974 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Mtr6g1979 974 Gene3D Ribonuclease Inhibitor 637 779 IPR032675 -
Mtr6g1979 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 447 IPR027417 -
Mtr6g1979 974 Gene3D - 183 347 IPR027417 -
Mtr6g1979 974 SMART till_3 17 160 IPR000157 GO:0007165
Mtr6g1979 974 SUPERFAMILY L domain-like 535 787 - -
Mtr6g1979 974 PRINTS Disease resistance protein signature 220 235 - -
Mtr6g1979 974 PRINTS Disease resistance protein signature 295 309 - -
Mtr6g1979 974 PRINTS Disease resistance protein signature 388 402 - -
Mtr6g1979 974 PRINTS Disease resistance protein signature 608 624 - -
Mtr6g1979 974 SMART AAA_5 217 356 IPR003593 -
Mtr6g1979 974 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 163 IPR035897 -
Mtr6g1979 974 Pfam TIR domain 18 188 IPR000157 GO:0007165
Mtr6g1979 974 Gene3D - 354 437 IPR042197 -
Mtr6g1979 974 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 904 IPR044974 GO:0006952
Mtr6g1979 974 PANTHER ARCHAEAL ATPASE 28 904 - -
Mtr6g1979 974 Gene3D Ribonuclease Inhibitor 524 636 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1979 Mtr-Chr6 36158625 36166669 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1979 564 764 WRKY Transcription Factor Family AT5G45050 29.767 1.40e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1979 - - mtr:MTR_6g071935 1211.05