Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1976 ATGGCTATACAATCACCTTCCTCATCCTCTTCATTTTCCTATGGATTCACTTACCAAGTGTTCCTCAGTTTTAGGGGCACTGACACTCGCCACGGTTTTACCGGAAATCTCTACAAGGCTCTTACTGACAAGGGAATCAAAACCTTCATTGATGACAATGATCTTCAAAGAGGAGATGAAATCACACCATCACTCCTCAAGGCCATCGAAGAATCTAGGATTTTTATTCCTGTGTTTTCTATCAACTACGCCACATCAAAATTTTGCTTGGACGAACTTGTTCACATTATTCATTGCTACAAGACAAAAGGTCGCCTCGTTTTGCCTGTTTTCTTTGGTGTCGATCCTACTAATGTGCGACATCATACAGGTCGTTATGGTGAAGCATTGGCTGGGCATGAAAAGAGGTTTCAAAATGATAAGGATAACATGGAGAGGTTGCATCAATGGAAGTTGGCTCTGACCCAAGCTGCTAACTTGTCCGGCTACCATTCTAGTCCTGGATATGAATACAAGTTTATTGGAGATATAGTCAAATACATCTCCAACAAGATCAGTCGTCAGCCCTTACATGTTGCCAATTACCCTGTTGGATTGCAGTCTCGAGTACAACAAGTGAAATCGCTTCTTGATGAAGGATCTGATGATGGAGTCCGCATGGTAGGACTTTATGGTACTGGAGGCTTGGGTAAATCAACACTTGGAAAAGCAATTTATAATTTTATTTCTGATCAATTTGAATGCTCATGTTTTCTTGAAAATGTGAGAGAGAGTTCAGCTTCAAATAGATTGAAACATCTCCAGGAGGTGCTCCTTTTAAAAACACTTCAACTGAAAATTAAGTTAGGAGGTGTTAGTGAGGGAATTCCTTATATAAAGGAAAGGCTACATACAAAGAAGATTCTTTTGATTCTCGATGATGTTGACGATATGAAGCAACTACATGCTTTGGCAGGAGGACCTGATTGGTTCGGCCGTGGAAGCAGGGTCATCATTACGACTCGAGACAAACACTTACTAAGAAGTCATGGGATAGAAAGTACACATGAAGTGAAAGGGCTGTATGGGACAGAAGCTCTTGAGTTGTTGAGATGGATGGCTTTTAAGAATAACAAAGTACCTTCAAGTTATGAAGACGTTTTAAATCGTGCAGTTTCGTATGCTTCGGGCCTTCCCTTAGTTTTAGAAATAGTGGGTTCCAACTTGTTTGGAAAGACGATAGAAGAATGGAAGGGTACTTTAGATGGATATGAAAAGATTCCCAATAAAAAGATCCACGAGATACTTAAAGTAAGCTATGATGCTTTGGAGGAAGAGCAACAAAGTGTTTTTCTAGACATTGCATGTTGCTTCAAAGGATGTGAGTGGGAGGAGTTTGAAGATATACTTCGTGCTCATTATGGCCATTGCATAACACATCATCTAGGAGTGTTGGCTGAAAAATCTCTCGTTAAGATTAGTAGTACTTCTTACCATTCGGGATCTATTTATGATGTGAGATTACATGACTTGATAGAAGACATGGGTAAAGAAGTCGTCCGACAAGAATCGCCTAAAGAGCCTGGAGAAAGAAGTAGGTTATGGTGTCAAGATGATATAGTTAATGTTTTAAAAGAAAACACCGGAACTAGTAAAATTGAAATGATATATATGAATTTCCCCTCCGAGGAATCCGTAATAGACAAGAAAGGAAAGGCCTTCAAGAAGATGACAAGATTGAAAACGCTTATCATTGAAAATGGCCATTTTTCTAAAGGTCTCAACTATCTTCCAAGTAGTTTGAGAGTATTGAAATTACGTGGATGTTTATCAGAGTCTCTGTTATCAAGTAGTTTAAGCAAGGCAAGTGAAATAACTTCATTTTCTTATTGTATATATTTATTAATTTACAATGATTTTGTTTTCGCCAACAAAGAAGAAATCACTATGATAGTATAG 1938 0.3849 MAIQSPSSSSSFSYGFTYQVFLSFRGTDTRHGFTGNLYKALTDKGIKTFIDDNDLQRGDEITPSLLKAIEESRIFIPVFSINYATSKFCLDELVHIIHCYKTKGRLVLPVFFGVDPTNVRHHTGRYGEALAGHEKRFQNDKDNMERLHQWKLALTQAANLSGYHSSPGYEYKFIGDIVKYISNKISRQPLHVANYPVGLQSRVQQVKSLLDEGSDDGVRMVGLYGTGGLGKSTLGKAIYNFISDQFECSCFLENVRESSASNRLKHLQEVLLLKTLQLKIKLGGVSEGIPYIKERLHTKKILLILDDVDDMKQLHALAGGPDWFGRGSRVIITTRDKHLLRSHGIESTHEVKGLYGTEALELLRWMAFKNNKVPSSYEDVLNRAVSYASGLPLVLEIVGSNLFGKTIEEWKGTLDGYEKIPNKKIHEILKVSYDALEEEQQSVFLDIACCFKGCEWEEFEDILRAHYGHCITHHLGVLAEKSLVKISSTSYHSGSIYDVRLHDLIEDMGKEVVRQESPKEPGERSRLWCQDDIVNVLKENTGTSKIEMIYMNFPSEESVIDKKGKAFKKMTRLKTLIIENGHFSKGLNYLPSSLRVLKLRGCLSESLLSSSLSKASEITSFSYCIYLLIYNDFVFANKEEITMIV* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1976 645 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 163 IPR035897 -
Mtr6g1976 645 Pfam NB-ARC domain 201 435 IPR002182 GO:0043531
Mtr6g1976 645 Gene3D - 16 186 IPR035897 -
Mtr6g1976 645 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Mtr6g1976 645 PANTHER ARCHAEAL ATPASE 27 640 - -
Mtr6g1976 645 Pfam TIR domain 18 186 IPR000157 GO:0007165
Mtr6g1976 645 PRINTS Disease resistance protein signature 220 235 - -
Mtr6g1976 645 PRINTS Disease resistance protein signature 295 309 - -
Mtr6g1976 645 PRINTS Disease resistance protein signature 388 402 - -
Mtr6g1976 645 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 640 IPR044974 GO:0006952
Mtr6g1976 645 Coils Coil 638 645 - -
Mtr6g1976 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Mtr6g1976 645 SUPERFAMILY "Winged helix" DNA-binding domain 423 538 IPR036390 -
Mtr6g1976 645 Gene3D - 187 349 IPR027417 -
Mtr6g1976 645 SMART till_3 17 160 IPR000157 GO:0007165
Mtr6g1976 645 Gene3D - 354 437 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1976 Mtr-Chr6 36135604 36138143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1976 12 597 WRKY Transcription Factor Family AT4G12020 28.453 5.24e-53 195