Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1974 ATGGTCAGGAAGAGGAGAACTGATGGACCCAGTGGTGCTGAAGGTTCTGAAGGTCAGCAGAGGACTTCGCCTCCTCAACAGCAAGGTGCTGTAACTGGTGGTGCTGGATATCAGGGAGGCGGAGGACCTCAAGGAGGTCGTGGCTATGCTCCCCAGGGTGGTCGTGGCGATTATGGTGGTGGCCGCGGTGATTATGGCGGTGGTCGTGGAGACTATGGAGGTGGGCGTGGTGACTATGGTGGCGGACGAGGTGCTTATGGTGGTGGTGGACGAGGTGGCCGTGGGATGCCCCAACAACAGTATGGGGGGCCTCCGAGGGGAGGACCTCCTCAACAACAACAGCAGTACGGTGGACCTCCGGAATATCAAGGAAGGGGTAGAGGACCTTCTCAACAGCCAGGTGGCCGTGGGTACGGTGGTGGAAGAGGTGGATATAGCGGTGGTGTTGGTGCTGGTGCTGGCCATGATGTTGTTTCATCCTATGGAGGCCCACCAAGGCAACCCTCATACCCCGAGCTGCACCAAGCAACCCCTGTATCTTCTGCTCCCTACCAAGTCCCTGTGTTGCCTCCAGCTGCATCCCATTCCGAGGCTAGTTCTTCTCAGCCACCAGAAGTGACTGAAGTGGAGCAGGATTTGGGACAGTTGACAATCCAGTCAGATGAGACTCCTGCTCCTCCTCCTCCTCCTCAAAGTAAATCCTCACTGAGGTTTCCCCTTCGTCCTGGAAAAGGGAGCTACGGTAGGAAAACTTTAGTGAAGGCAAACCATTTCTTTGCTGAGTTGCCTAAGAAGGATCTTCATCAGTATGATGTTACAATTACTCCTGAAGTTACATCTAGAGGGGTTAACCGTGCTGTTATGGAGCAGCTTGTAAGGCTGTACCGTGATTCTCACCTTGGAAAGAGGCTTCCTGCTTACGATGGCCGTAAGAGTCTCTATACTGCTGGACCGCTTCCTTTTATTTCAAAGGACTTCAGAATCACCCTTGTTGATGAAGATGATGGATCTGGTGGACAGAGGAGGGACAGGGAGTTCAAAGTTGTGATTAAATTGGCTGCACGTGCTGACCTTCACCACCTGGGACTCTTTTTGGAGGGGAGGCAAACTGATGCGCCTCAGGAAGCTCTGCAGGTTCTTGACATTGTTCTCCGGGAGCTTCCTACCTCCAGGTATTGTCCAGTGGGAAGATCCTTTTATTCACCTGATCTAGGTAGAAGGCAGCCTTTAGGTGAGGGATTGGAAAGTTGGCGTGGTTTCTACCAAAGCATTCGTCCTACTCAAATGGGACTATCTCTGAACATTGATATGTCGTCAACGGCTTTCATTGAGCCATTACCTGTCATTGAGTTCGTTACCCAGTTGCTTAACAGGGATGTCTCTGCCAGGCCTTTGTCTGATGCTGATAGAGTGAAGATCAAAAAGGCACTTCGTGGTATCAAAGTTGAAGTCACACATCGTGGCAATATGAGGAGAAAATATCGCATTGCTGGTCTGACTTCCCAAGCTACCAGAGAATTAACATTCCCTGTGGATGAGAGGGGTACCATGAAGTCTGTTGTGGAGTATTTCTTTGAGACGTATGGTTTTGTCATTCAACATACTCAGTGGCCTTGTTTGCAAGTTGGAAACCCACAGAGGCCTAATTACCTCCCAATGGAGGTCTGCAAGATTGTGGAGGGCCAAAGGTACTCCAAAAGACTTAATGAGAGGCAGATTACAGCCTTGCTCAAGGTTACTTGTCAGCGTCCCCTTGACAGAGAGCGGGACATTATGCAGACAGTACATCACAATGCCTACCACGAAGATCCCTATGCTAAGGAGTTTGGAATTAAAATCAGTGATCGGCTTGCTCAAGTGGAAGCTCGCATCCTTCCTGCACCTTGGCTCAAATATAATGATACAGGTAGAGAAAAGGATTGTCTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGTTCAATGGTGGATCGGTTAAATACTGGTTATGTGTTAACTTTTCAAGGACTGTGCAAGATAGTGTTGCACGTGGCTTCTGCTATGAGCTTGCCCAGATGTGTTATGTATCTGGCATGGAGTTTAATGCAGAGCCAGTAGTTCCTGCTCTTACTGCTCGTCCTGACCAAGTAGAGAAAGTTCTTAAAAATCGGTATCATGATGCGAAGAGCAAGATGCCTAAAGACAAAGAGCTTGACCTGCTCATTGTTATATTGCCTGATAATAATGGCTCTCTCTATGGTGACCTTAAAAGGATATGTGAGACTGACTTGGGGGTTGTTTCCCAGTGCTGTTTAACTAAACATGTCTTTAAGATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATCAATGTGAAGGTTGGGGGTAGGAATACAGTGCTTGTTGATGCACTTTCTCGACGCATTCCACTTGTTAGTGACAGGCCTACAATCATTTTTGGTGCTGATGTTACTCATCCACACCCTGGAGAGGATTCAAGCCCATCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCCGAAATTACCAAGTATGCTGGTTTGGTTTGTGCCCAAGCACATCGCCAAGAGCTCATTCAAGATCTTTTCAAACAATGGCAAGATCCAGTCAGGGGGACATTGACCGGTGGAATGATCAAGGAGCTTCTTATATCTTTCCGTAGAGCTACTGGACAAAAGCCCCAGCGCATCATCTTTTACAGAGATGGAGTGAGCGAGGGACAATTTTACCAGGTGCTGTTGTTTGAGCTTGATGCGATCCGGAAGGCTTGTGCATCCCTTGAACCCAACTATCAGCCTCCTGTGACTTTTGTTGTGGTTCAAAAACGTCATCATACTAGGCTCTTTGCTAGTAACCACCAAGACAAGAGCTCTGTTGATCGGAGTGGCAATATATTGCCTGGTACTGTTGTGGATTCTAAGATCTGCCATCCCACAGAATTTGACTTTTATCTTTGCAGCCATGCTGGAATTCAGGGCACAAGCCGTCCCGCTCACTATCATGTGCTGTGGGATGAGAATAATTTTAGTGCTGATGGTCTTCAAAGTTTAACTAATAACCTGTGCTACACATATGCCAGATGCACCCGTTCTGTTTCTATTGTGCCCCCAGCATATTATGCACATTTGGCTGCATTCAGGGCTAGGTTCTACATGGAGCCTGAGACCTCTGACAGTGGCTCAATGACAAGCGGTGCTGTTTCTCGTGGAGGAGCTGGAGCTGCTGTAGGACGTAGTACCCGTGCTCCTGGAGCTAATGCTGCTGTTAGACCCCTGCCTGCATTGAAGGACAATGTCAAGAAGGTCATGTTCTACTGTTGA 3330 0.4826 MVRKRRTDGPSGAEGSEGQQRTSPPQQQGAVTGGAGYQGGGGPQGGRGYAPQGGRGDYGGGRGDYGGGRGDYGGGRGDYGGGRGAYGGGGRGGRGMPQQQYGGPPRGGPPQQQQQYGGPPEYQGRGRGPSQQPGGRGYGGGRGGYSGGVGAGAGHDVVSSYGGPPRQPSYPELHQATPVSSAPYQVPVLPPAASHSEASSSQPPEVTEVEQDLGQLTIQSDETPAPPPPPQSKSSLRFPLRPGKGSYGRKTLVKANHFFAELPKKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRDSHLGKRLPAYDGRKSLYTAGPLPFISKDFRITLVDEDDGSGGQRRDREFKVVIKLAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRIAGLTSQATRELTFPVDERGTMKSVVEYFFETYGFVIQHTQWPCLQVGNPQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVHHNAYHEDPYAKEFGIKISDRLAQVEARILPAPWLKYNDTGREKDCLPQVGQWNMMNKKMFNGGSVKYWLCVNFSRTVQDSVARGFCYELAQMCYVSGMEFNAEPVVPALTARPDQVEKVLKNRYHDAKSKMPKDKELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHQDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVSRGGAGAAVGRSTRAPGANAAVRPLPALKDNVKKVMFYC* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1974 1109 ProSiteProfiles PAZ domain profile. 446 560 IPR003100 GO:0005515
Mtr6g1974 1109 Pfam Mid domain of argonaute 643 718 IPR032473 -
Mtr6g1974 1109 Pfam Piwi domain 736 1055 IPR003165 GO:0003676
Mtr6g1974 1109 SMART DUF1785_2 393 445 IPR014811 -
Mtr6g1974 1109 Pfam Argonaute linker 1 domain 394 444 IPR014811 -
Mtr6g1974 1109 Gene3D paz domain 439 564 - -
Mtr6g1974 1109 Pfam N-terminal domain of argonaute 249 384 IPR032474 -
Mtr6g1974 1109 PANTHER PROTEIN ARGONAUTE 1A 133 1108 - -
Mtr6g1974 1109 MobiDBLite consensus disorder prediction 1 243 - -
Mtr6g1974 1109 SMART Piwi_a_2 735 1056 IPR003165 GO:0003676
Mtr6g1974 1109 Pfam Argonaute linker 2 domain 586 632 IPR032472 -
Mtr6g1974 1109 MobiDBLite consensus disorder prediction 105 119 - -
Mtr6g1974 1109 ProSiteProfiles Piwi domain profile. 735 1056 IPR003165 GO:0003676
Mtr6g1974 1109 CDD PAZ_argonaute_like 445 559 - -
Mtr6g1974 1109 CDD Piwi_ago-like 604 1055 IPR045246 -
Mtr6g1974 1109 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 133 1108 - -
Mtr6g1974 1109 Gene3D - 804 1109 IPR036397 GO:0003676
Mtr6g1974 1109 SUPERFAMILY PAZ domain 252 597 IPR036085 GO:0005515
Mtr6g1974 1109 Pfam Glycine-rich region of argonaut 117 223 IPR024357 -
Mtr6g1974 1109 Gene3D - 624 798 - -
Mtr6g1974 1109 MobiDBLite consensus disorder prediction 13 33 - -
Mtr6g1974 1109 MobiDBLite consensus disorder prediction 194 221 - -
Mtr6g1974 1109 Pfam PAZ domain 450 575 IPR003100 GO:0005515
Mtr6g1974 1109 SUPERFAMILY Ribonuclease H-like 729 1056 IPR012337 -
Mtr6g1974 1109 SMART PAZ_2_a_3 450 582 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1974 Mtr-Chr6 36102337 36111045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1974 169 1109 Eukaryotic Initiation Factors Gene Family AT1G48410 81.693 0.0 1601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1974 K11593 - gmx:100778754 1713.74