Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1971 ATGTCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAACTTGTCAATTATTATCTAAAGAGGAAAATCAATGGTCAAGAAATTGAACTTGATATTATTCCTGAAGTTGATCTTTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTACTTTTTCGGACCGCGGGACCGAAAATACCCTAATGGATTTAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCTACTGGTAAAGACAGAAAAGTTTCATGCCAAAACAGACCTATTGGTATGAAGAAGACATTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTCGAACTGATTGGGTTATGCATGAGTATCGCCTTGATGATAAAGAGTGTGAGGACAACACTGGATTACAGGATACGTATGCATTGTGTCGTGTGTTCAAGAAAAACGGAATCTGTTCTGATGTGGAAGAGCAACAAGGACAATGTAGCATGTTACAAATTGAATGTTCTCAAACCATAATCAATAATGAGTGTGAAATGATGTCTCCAGAAATACTAGGAACATCATCTTCATGCTTAGAAGAGGAAGACAAAGATGATTCTTGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATACACCAATGGTTGGTGGTGAAGAAATTTCACATGTTACATTTACAAATTAA 720 0.3722 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDVEEQQGQCSMLQIECSQTIINNECEMMSPEILGTSSSCLEEEDKDDSWMQFITEDAWYSSNTPMVGGEEISHVTFTN* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1971 239 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Mtr6g1971 239 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Mtr6g1971 239 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Mtr6g1971 239 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 239 - -
Mtr6g1971 239 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Mtr6g1971 239 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1971 Mtr-Chr6 36009679 36014779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1971 1 228 NAC Transcription Factor Family AT3G17730 75.934 5.41e-131 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr6g1971 NAM 8.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1971 - - gmx:100784495 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1971 6 36009679 36014779 Mtr6g1971 6 36009679 36014779 ECH