Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1969 ATGGTTACCCCTGTTATTGCTATGCCTATGGCTAACATTATTGGAGTACCATCTCTTCTACTTCAAGCACCCTTAACAAATTCAATCACTTTCACTCTCAACACCAAAATCAAAACCCAAAAACATAAACTTTATCTCAATTTCTCCCAACCCAACAACATAACAACCTCGTTTTCATCTTCCTTATCATTATCACTTAGAAATAATGTCCATTGTTCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATCTTCTTCATCTTCTAATTCCCGTTCAACTAGGCTGTATGTTAGTGGGCTATCATTTCGCACAACGGAAGAGAGCTTGCGAAATGCATTTAAGAATTTCGGTCAACTTGTGGATGTCAATCTGGTGATGGATAAAGTTGCGAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACCGAAGAGGAATCAAAGAAGGCTATTGAAGGAATGCATGGAAAGTTCCTGGACGGTAGGGTCATATTTGTGGAAGTTGCTAAACCAAGATCAGAGCTAAGACAGGGATCCAAGCAATAA 552 0.3986 MVTPVIAMPMANIIGVPSLLLQAPLTNSITFTLNTKIKTQKHKLYLNFSQPNNITTSFSSSLSLSLRNNVHCSVLACLPPASESSSSSSSNSRSTRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQGSKQ* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1969 183 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 19 183 - -
Mtr6g1969 183 SUPERFAMILY RNA-binding domain, RBD 79 180 IPR035979 GO:0003676
Mtr6g1969 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Mtr6g1969 183 SMART rrm2_1 96 169 IPR003954 GO:0003676
Mtr6g1969 183 PANTHER NUCLEOLAR PROTEIN 8 19 183 - -
Mtr6g1969 183 SMART rrm1_1 96 169 IPR000504 GO:0003723
Mtr6g1969 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 166 IPR000504 GO:0003723
Mtr6g1969 183 Gene3D - 80 183 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1969 Mtr-Chr6 35993754 35996812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1969 93 178 Eukaryotic Initiation Factors Gene Family AT4G34110 26.744 5.09e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1969 - K13195 lang:109343093 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1969 6 35993754 35996812 Mtr6g1969 6 35993754 35996812 ECH