Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr6g1968 | ATGGAGAATAAGGATCAAGTTCAAGGCACAAAGTCAACTGGAACAGCTAGTAAGTGCCATTCCAAAGGTGGATCGCAGTCTGAAAATGATGCGAAGTCGCAGGATATACCTTCTGTCGGAAACAACCTTGCTCCCAAGGTTAGGAAACCGTATACCATCACTAAACAAAGGGAGAAATGGACCGACGAAGAGCATCAAAAGTTCCTTGAGGCTTTGAAACTATATGGCCGTGGCTGGCGTCAAATTGAAGAACATATAGGGTCCAAAACTGCAATTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGTGCTGAAAGTCCTATTCAGCCAATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCCCTTCATCCATACCCTCGCAAATCAGTTGACTCTTTCAAAGGACAGTTGGTCCCAAATGAATCAGAAACATCTCCATCCATTAACCTGTCAGTTGCAGAAAACGACACCCAATCGCCAACCTCTGTACTTGGTTCGGAAGCATTTGGGTCGGCAGCATTTTCTGAGCAGACTAATAGATGTCTTTCTCCAAATTCTTGCACCACCGAGATTCACCCGGTCAGCTTGTCACCTGTTGAGAAAGAAAACGATTGCCAGACATCCAAACCATCTGAGGAGGAAGAGAAAGGATCTCTAGCTTCAATTCCATCCACCGACTCAAAACCACTTATGTGCATGAAGTCTGAGAATATTTCTTCCGAGGAAACTCAATCTTCCAAAGAAGACGCTGCAAATATGCCACAAATCACTAGTATTAAGCTGTTTGGTCGAACACTCTCTATGGGTTCTCAGAAGTCAATGAAGGATGATGACGAAAATACTAAGTTAATAACTATCAAGTCTAATGAAATGGAGGATGTTGAGAAGGTTGGCCAAAAAGAGGTATCAGAGCCACTTGATATACAATTATCACTAGGCATCTGTACACCTGATGGAGCTCAAGTGAGCAGCATGGAACGGCCGAAGGAGAGTCCATATGTCAGCGAGTGCGCAACTTTACCGTTATGGAGTTTGTACCAAGGCCTTCCAGCTTTCCACCTCATGCCATGCAATCATCAAATTCTTAATCCTGTGCCTCTTAGACCTTGTTTGAAGGTAATAACAAGAGAGGAGGAAAGTTCTTGCACTGGTTCTAATACCGAATCAGTCTGTGATATGGAAAATCAAAGCAAGAACAACTCATCAGATACCGATGATTCTCAAACTCAAAAACATCGTCAGGAAGGAGTTGTCCTTAAGAAATCTGGAAGAGGGTTTGTTCCATATAAAAGATGTTTAGCTGAAAGAGATGAAAATTCTTTAATTGCTGGCTTGGAAGAAAGAGAGGGACAAAGAGCTCGTGTGTGTTCATAG | 1404 | 0.433 | MENKDQVQGTKSTGTASKCHSKGGSQSENDAKSQDIPSVGNNLAPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIEEHIGSKTAIQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKSVDSFKGQLVPNESETSPSINLSVAENDTQSPTSVLGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPVEKENDCQTSKPSEEEEKGSLASIPSTDSKPLMCMKSENISSEETQSSKEDAANMPQITSIKLFGRTLSMGSQKSMKDDDENTKLITIKSNEMEDVEKVGQKEVSEPLDIQLSLGICTPDGAQVSSMERPKESPYVSECATLPLWSLYQGLPAFHLMPCNHQILNPVPLRPCLKVITREEESSCTGSNTESVCDMENQSKNNSSDTDDSQTQKHRQEGVVLKKSGRGFVPYKRCLAERDENSLIAGLEEREGQRARVCS* | 468 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Mtr6g1968 | 467 | PANTHER | PROTEIN REVEILLE 7-RELATED | 5 | 454 | - | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 145 | 174 | - | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 392 | 414 | - | - | |
| Mtr6g1968 | 467 | PANTHER | SWI/SNF COMPLEX-RELATED | 5 | 454 | - | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 228 | 260 | - | - | |
| Mtr6g1968 | 467 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 55 | 104 | IPR006447 | GO:0003677 | |
| Mtr6g1968 | 467 | Pfam | Myb-like DNA-binding domain | 57 | 100 | IPR001005 | - | |
| Mtr6g1968 | 467 | SMART | sant | 56 | 104 | IPR001005 | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 392 | 427 | - | - | |
| Mtr6g1968 | 467 | ProSiteProfiles | SANT domain profile. | 55 | 106 | IPR017884 | - | |
| Mtr6g1968 | 467 | CDD | SANT | 59 | 102 | IPR001005 | - | |
| Mtr6g1968 | 467 | ProSiteProfiles | Myb-like domain profile. | 52 | 102 | IPR001005 | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 189 | 260 | - | - | |
| Mtr6g1968 | 467 | SUPERFAMILY | Homeodomain-like | 51 | 105 | IPR009057 | - | |
| Mtr6g1968 | 467 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 52 | 106 | IPR017930 | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 106 | 174 | - | - | |
| Mtr6g1968 | 467 | MobiDBLite | consensus disorder prediction | 189 | 203 | - | - | |
| Mtr6g1968 | 467 | Gene3D | - | 59 | 106 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr6g1968 | Mtr-Chr6 | 35988958 | 35993250 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Mtr6g1968 | Myb_DNA-binding | 3.7e-12 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr6g1968 | - | - | gmx:778089 | 596.275 |