Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1967 ATGGAGTATCATAGTGGTGGAAGTGGGTCCCCTGGTGATCATCATCATCATCATCACCATGAAGGTTCTTCTGAGTCTCAAAGGAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAAGCTATGTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGCAGTTAAGCAGAGAATTAGCTTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAACATGAGAGAGCTGATAACTGTCAACTAAGGGCAGAAAATGATAAAATAAGATGTGAGAATATAGCTATAAGGGAAGCCCTTAAAAATGTGATCTGCCCCTCTTGTGGTGGTCCTCCAATCAATGATGATTGTTTCTTTGATGAACAAAAGCTGAGAATTGAAAATGTGCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCTGCCAAATACATTGGAAGACCAATCACACAGCTTCCACCAGTTGCACCAATTCACATTTCATCATTGGACTTATCAATGGGAAATTTTGGTGGACAAGGAATGATTGGAGGAGGACCTTCTCTTGATCTTGATCTTCTACCAGGAAGTTCATCAACTATGCAGAATATTCCTTACCAACCAGCTTGTCTTTCTGACATGGAAAAGTCTCTCATGTCTGACATTGCATCAAATGCAATGGAAGAGATGATTAGGCTTTTGCAGACTAATGAGCCTCTGTGGATGAAATCAAACTCTGATGGTAAAGATGTTCTTAATCTTGAAAACTATGAGAGGATGTTCCCTAAGACTACTAATCGGTTGAAGAATCCGAATATTCGCATTGAAGCTTCGAGGGATTCTCGCGTTGTTATCATGAATGGCTTAGCTTTGGTTGAAATGTTTATGGATCCAAACCAGTGGATGGCTCTATTTCCTACTATTGTGACTATGGCAAGGACTATTGAAGTTATCTCTTCCGGAATGATGGGCGGTCCTAGTGGTTCTATGCAATTGATGTATGAGGAGTTGCAAGTGCTGTCACCACTTGTTCCTATCAGAGAATTCTACTTCTTGCGTTACTGTACGCAAATTGAGCAAGGTTTATGGGCAATTGTTGATGTTTCCTATGATTTTCCTCATGACAACCAATTTGCTCCTCAGTTTCGATGTCATCGTCTTCCTTCTGGCTGCTTCATTCAAGACATGCCTAATGGCTACTCCAAGGTCACTTGGATTGAACACTTGGAGATCGAAGACAAAAATCCAGTTCATAGGTTTTATCGAAATGCTATCTATAGTGGAGCTGCATTTGGAGCTGAAAGATGGCTCACTACTCTTCAGAGGATGTGTGAAAGGATTGCTTGTTCAATGGTTTCAGCCACCCGTGATCTCGGTGGAGCGATTCCATCACCTGAGGGAAAGAGCAGCATGATGAAGCTAGCACAAAAGATGGTAACTAGTTTCTGTGCAAGCATAAGTGCATCAGCTAGTCATAGATGGACCACACTTTCATCTTTGAATGAGACTGGAGTCAGAGTTACTGTTAGGAAGAGTACTGAGCTTGGTCAGCCTAGTGGTGTTGTGCTATGTGCAGCTACTACCATTTGGTTACCTCTCCCTCCACAAACTGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCACAGTGGGATGTTCTATCTAATGGAAATGCTGTCCAAGAAGTTGCTCATATTGCAAATGGTTCACACCCTGGCAACTCCATCTCTGTGCTTAGGGCTTTCAACACAAGTCAAAACAACATGTTGATACTTCAAGAAAGCTGTGTGGATTCATCGGGTTCAATTGTAGTCTATTGTCCAATTGAATTGACATCTATGAATGTAGCAATGAGTGGTGAAGATACTTCCCACATTCCAGTAACACCCTCAGGTTTCACAATCACTTCTGATGGAAACACACTTGATAACAATAACAATCTTCAAGGAAGTGGCAATGTTAATGCTGATGGAGCTTCAACAAGCTCAAACCTAGGGAACAATGGTGGTAGTGGAGGATCATTGATAACAGTTGCATTCCAAATAATGGTTAGTAGTTTACCATCTGCTAAGCTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAGACTGTTCAGCACATAAAAGCTGCTTTGAATTGCCCTAGTTCTTGA 2187 0.4129 MEYHSGGSGSPGDHHHHHHHEGSSESQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCQLRAENDKIRCENIAIREALKNVICPSCGGPPINDDCFFDEQKLRIENVQLKEELDRVSSIAAKYIGRPITQLPPVAPIHISSLDLSMGNFGGQGMIGGGPSLDLDLLPGSSSTMQNIPYQPACLSDMEKSLMSDIASNAMEEMIRLLQTNEPLWMKSNSDGKDVLNLENYERMFPKTTNRLKNPNIRIEASRDSRVVIMNGLALVEMFMDPNQWMALFPTIVTMARTIEVISSGMMGGPSGSMQLMYEELQVLSPLVPIREFYFLRYCTQIEQGLWAIVDVSYDFPHDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHLEIEDKNPVHRFYRNAIYSGAAFGAERWLTTLQRMCERIACSMVSATRDLGGAIPSPEGKSSMMKLAQKMVTSFCASISASASHRWTTLSSLNETGVRVTVRKSTELGQPSGVVLCAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNSISVLRAFNTSQNNMLILQESCVDSSGSIVVYCPIELTSMNVAMSGEDTSHIPVTPSGFTITSDGNTLDNNNNLQGSGNVNADGASTSSNLGNNGGSGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSS* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1967 728 Pfam START domain 230 454 IPR002913 GO:0008289
Mtr6g1967 728 SUPERFAMILY Homeodomain-like 7 87 IPR009057 -
Mtr6g1967 728 SUPERFAMILY Bet v1-like 473 718 - -
Mtr6g1967 728 MobiDBLite consensus disorder prediction 21 36 - -
Mtr6g1967 728 CDD START_ArGLABRA2_like 224 453 - -
Mtr6g1967 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 726 IPR042160 -
Mtr6g1967 728 CDD homeodomain 29 88 IPR001356 GO:0003677
Mtr6g1967 728 ProSiteProfiles START domain profile. 220 457 IPR002913 GO:0008289
Mtr6g1967 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 20 726 - -
Mtr6g1967 728 MobiDBLite consensus disorder prediction 1 36 - -
Mtr6g1967 728 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Mtr6g1967 728 ProSitePatterns 'Homeobox' domain signature. 62 85 IPR017970 GO:0000981|GO:0006355
Mtr6g1967 728 SUPERFAMILY Bet v1-like 221 455 - -
Mtr6g1967 728 Gene3D - 228 452 IPR023393 -
Mtr6g1967 728 Gene3D - 14 103 - -
Mtr6g1967 728 SMART HOX_1 28 91 IPR001356 GO:0003677
Mtr6g1967 728 Pfam Homeodomain 30 85 IPR001356 GO:0003677
Mtr6g1967 728 SMART START_1 229 454 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1967 Mtr-Chr6 35946962 35952212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1967 25 728 Homeobox Transcription Factor Family AT1G73360 63.624 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr6g1967 START 3.4e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1967 K09338 - gmx:100809075 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1967 6 35946962 35952212 Mtr6g1967 6 35946962 35952212 ECH