Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1965 ATGGAGTCACAGAAGACACAAACTAGTCTAAAAAATGGACATGATGGTGCACTATGTAGTGTAGTTGTGATAGAAAACAAAGTAGATAATTTCAAGACAGAAAAAGTTTCTCCTTTCAATGTCAAAGGTGAAAAACATTGGAATAATAACCATGATGGAGAAAATGAACATTTAGAGAAATCTGGGCTATTAGGAATGTGTGATGATCCTTATTGTACTACTTGTCCTACTTACTTCAAGGCTTCTCAACACACAAATCCAAAATATTCAAATGAATTTAATCCCAAGTTCCAAAATGCACTTTATGGAGATGCCAAGGGTTTTGGGAGAGATTTTTTCTCTTTCTGCTCTTCATGTGTTCCTGGAGTTATAAACCCTCACACTAAACTTGTTCAACAATGGAACAAATTTCTGGCCATTTTTTGCATGCTGGCAATTTTTGTGGATCCATTATTTTTATTCTTAATATATGTGCAGAAGGACTTTAATTGTATTGCTATTGACTGGAGAATGACAGAAACACTTGTTTTGCTTAGAAGCATGAATGATTTTGTATATTTCTTAAACATTCTTCTCCAGTTTAGGTTGGCCTATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCCGGAGATTTAGTTGATGATCCCAAGAAAATTGCAGTCCGCTACCTGCAGAGTTATTTTCTTCTTGACTTATTTGTTGTCTTGCCTCTTCCTCAAATAATGATACTAACTGTGTTACCGAGGCACTTGGGTTTATCAGGAGCAAATTATGCTAAGAATCTTCTACGTGCGGTGATTCTTGTGCAATATATTCCAAGATTATTTAGAATTTTGTCTCTGCTAAATGGAAGGTCTCCAACTGGATTCATATTTGAGTCGGCAAGGGCTAATTTCATCATAAATCTTCTCATGTTTATGCTTGCAAGCCATGTTGTTGGATCCTCCTGGTACCTCTTTGGTCTACAGAGGGTAAATCAATGTTTGAGAGATGCTTGCAATAAGTCAAACATCAAAGGATGCATTGATATCATTGACTGCGGCCATGGTCGTAATGGAACTTACCAGTTATCAGACCAAACATCAGTTATGTGGAACAACAATTCAGATGCCATTGCTTGTTTGAATCCTTCTCCGAATGGTTTTCGTTATGGAATCTATGTCACTGCTGTACCGCTTACCTTTGAAACTAACGTGGTCAACAAATATGTATATTCTCATTTTTGGGGATTGCAGCAAATCAGTACTCTAGCTGGGGGTCTAACACCAAGCTATTTTGTATGGGAAGTTCTTTTTACAATTGCAATCATAGGATTGGGACTCTTGCTTTTTGCACTTCTCATTGGAAACATACAGAACTTTCTCCAAGGTCTTGGAAGAAGGAGGCTAGAAATGCTACTTAGAAGTCGCGATGTTGAGCAATGGATGAGGCATCGTCGGTTACCTGAAGATCTCAAAAGGAGAGTACAACAGGCTGAGCGGTATAATTGGGCGGCAACAAGAGGAGTGAATGAAGAAACACTTCTTGAGAATTTTCCGGAAGATCTCCAAATTGACATAAGGCGTCATCTCTTCAATTTTATTAAGAAAATTAGAATTTTCTCATTGATGGATGAGCCTATTTTAGATGCAATTTGTGAGAGACTAAGACAAAAAACATACATAAATGGAAGTAAAATTATGAGTAAGGGTGGTGTAGTTGGAAAGATGGTGTTTGTAGTGCGAGGAAAATTGGAGAGCATTGGAGAAAATGGAATTGGAGTTTCTTTATCTGAAGGAGATGCTTGTGGTGAAGAACTTCTTACATGGTATCTTGAACAATCTTCAGTAAGCAAAGATGGTAAAAAAGTAAGGCTTCCAGGACAGAGATTAATTAGCAACAGGACAGTAAAGTGCTTAACAAATGTGGAGGCATTTTCACTAAAAGCTGCTGATCTTGAAGAAGTCACAACCATTTTCACAAGATCCTTTAGGAGTTTTCTTGTTCAAGGACCTTTAAGGTATGAATCACCTTATTGGAGATCCCTAGCAGCAACCCGAATTCAGGTTGCATGGAGATATTGCAAGAAACGTCAAAAGTTATCAAATCCAACATTGAAGTTATAG 2103 0.3766 MESQKTQTSLKNGHDGALCSVVVIENKVDNFKTEKVSPFNVKGEKHWNNNHDGENEHLEKSGLLGMCDDPYCTTCPTYFKASQHTNPKYSNEFNPKFQNALYGDAKGFGRDFFSFCSSCVPGVINPHTKLVQQWNKFLAIFCMLAIFVDPLFLFLIYVQKDFNCIAIDWRMTETLVLLRSMNDFVYFLNILLQFRLAYVSPESRVVGAGDLVDDPKKIAVRYLQSYFLLDLFVVLPLPQIMILTVLPRHLGLSGANYAKNLLRAVILVQYIPRLFRILSLLNGRSPTGFIFESARANFIINLLMFMLASHVVGSSWYLFGLQRVNQCLRDACNKSNIKGCIDIIDCGHGRNGTYQLSDQTSVMWNNNSDAIACLNPSPNGFRYGIYVTAVPLTFETNVVNKYVYSHFWGLQQISTLAGGLTPSYFVWEVLFTIAIIGLGLLLFALLIGNIQNFLQGLGRRRLEMLLRSRDVEQWMRHRRLPEDLKRRVQQAERYNWAATRGVNEETLLENFPEDLQIDIRRHLFNFIKKIRIFSLMDEPILDAICERLRQKTYINGSKIMSKGGVVGKMVFVVRGKLESIGENGIGVSLSEGDACGEELLTWYLEQSSVSKDGKKVRLPGQRLISNRTVKCLTNVEAFSLKAADLEEVTTIFTRSFRSFLVQGPLRYESPYWRSLAATRIQVAWRYCKKRQKLSNPTLKL* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1965 700 ProSiteProfiles cAMP/cGMP binding motif profile. 532 600 IPR000595 -
Mtr6g1965 700 Gene3D Jelly Rolls 530 654 IPR014710 -
Mtr6g1965 700 Gene3D Helix hairpin bin 461 524 - -
Mtr6g1965 700 Pfam Ion transport protein 136 459 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr6g1965 700 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 15 697 - -
Mtr6g1965 700 SUPERFAMILY Voltage-gated potassium channels 126 460 - -
Mtr6g1965 700 SUPERFAMILY cAMP-binding domain-like 461 654 IPR018490 -
Mtr6g1965 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 697 - -
Mtr6g1965 700 Gene3D - 129 456 - -
Mtr6g1965 700 CDD CAP_ED 532 648 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1965 Mtr-Chr6 35867092 35872982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1965 45 610 Ion Channels AT3G17700 61.996 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1965 K05391 - ccaj:109789004 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1965 6 35867092 35872982 Mtr6g1965 6 35867092 35872982 ECH