Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1963 ATGGCTCTTCAATCTTTCATCTCCTCATCCTCCTCTTCCCTCTCCTATGGGTTTACCTATGATGTCTTCCTTAGTTTTAGAGGTAGTGACACTCGTTATGGTTTTACTGGAAATCTCTACAAAGATCTTTGTAAGAAGGGAATTCGCACCTTCATTGATGACAGAGAACTTCCAGGAGGTGACAAAATAACACCATCACTTTTCAAGGCCATTGAAGAGTCTAGGATTTTCATTCCTGTCTTGTCTATCAATTATGCTTCTTCTTCATTTTGCTTGGACGAACTTGTCCACATCATTCACTGCTGCAAGAAAAATGGACGCCTAGTTTTGCCAATTTTCTATGATGTGGAACCTTCTAACGTGAGACATCAGATTGGCAGTTATGGTAAAGCACTGGCTGAGCATATTGAGAAGTTCCAAAATAGCACGGATAACATGGAGAGGTTGCAGAAATGGAAGAGTGCTCTAACTCAAACAGCTAACTTCTCTGGCCACCATTTCAGTTCTAGGAATGGATATGAATACGAGTTTATTGAGAAGATAGTAAAATATTTATCCAGCAAAATCAATCGTGTTCCTCTATATGTTGCTGATTACCCTGTTGGTCTCGAGTCTAGGGTCCTAAAAGTAAATAAATTTCTTGATGTCGGATCTACTGGTGTAGTTCATATGCTAGGGATCTATGGGACTGGTGGAATGGGAAAGACAACACTTGCAAGAGCAGTTTATAATTCCATAGCTGATCAATTTGATTGTTTATGTTTTCTTCACGATGTAAGGGAAAATTCAACTAAATATGGTTTAGAGCATCTACAGGAAAAGCTCCTTTCCAAATTAGTTGAATTGGACATTGAGTTGGGAGATATCAACGAGGGAATTCCAATAATAAAGAAAAGGCTTCACCGAAACAAGGTTCTGCTAATTCTCGATGATGTTCACGAACTGAAGCAATTGCAGGTTTTAGCTGGAGGACTTGATTGGTTCGGTCCTGGTAGTAGAGTGATCGTTACCACTCGAGACAGACATTTGCTAAAAAGTCATGGGATTGAAAGAGCATATGAATTACCTAAGTTAAATGAGACCGAAGCTCTTGAATTGTTGAGGTGGAATTCTTTCAAAAATAACAAGGTGGATTCAAATTTCGATGGTGTTTTACGGTGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTAGAAGTAGTGGGTTCAAACTTATTTGGAAATAATATAGGAGAATGGAAATCTGCATTAGATCGGTATAGAAGGATTCCGATTAAAAAGATACAGGAGATACTTAAAGTAAGCTTTGATGCTTTGGAGAAAGATGAGCAGAATGTTTTTCTCGACATTGCTTGCTGCTTCAAAGGATATAATTTGAAAGAACTTGAAGATATACTTTATGCTCATTATGGTAACTGCATGAAATATCAAATCAGTGTGTTGGATGAAAAATCTCTCATAAAGATCAACAGGTACGAGGGGAATTATGTTGTGACGTTACATTTCTTGATAGAGAAAATGGGTAAAGAAATTGTCAATGAAAAATCTCCAAATGAGCCTGGAAGACATAGCAGGTTGTGGTTCCATAAAGATATAATTGATGTCTTAGAAGAAAATCAGGGATCAAGTGAAATTGAAATTATATATTTGGAATTCCCGTCATCTGAGGAAGAGGTGGTAGATTGGGAGGGAGATGAACTGAAGAAGATGGAAAACCTCAAAACACTTATTGTTAAGAATGGTACCTTTTCCAATGGTCCAAAATATCTTCCAAACAGTCTGAGAGTATTGGAATGGCCTAAATATCCTTCACCGGTCATACCATCTGATTTTTGCCCAAAGAAACTTTCTATATGCAAGCTACAACAAAGTGACTTTATTTCATTTGGGTTTCATGGCACAATGAAGAGGTTTGGGAATGTAAGAGAGTTAAATCTAGACGACTGTCAATATTTAACACGGATTCACGACGTCTCGAATCTCCCAAATTTAGAAATATTTTCATTTCAATTTTGTAAGAATTTAATTGAAATTCATGAATCTGTTGGGTTCCTAAATAAACTTCAAATCTTGAATGCTGTCAATTGCAGCAAGCTTAGGAGTTTCCCAGCTATGAAGTCCGCCTCTCTTCGAAGATTGGGGCTTGCATATTGTACGAGTCTTAAGACTTTTCCAGAAATATTAGGAGAGATGAAGAATATAACTCATATTTCTTTGATGAAAACTTCCATTGACAAATTGCCAGTTTCATTTCAAAATCTCACGGGGCTGCAAATCTTTTTTATAGAAGGAAATGTAGTGCAAAGGTTGCCAAGTAGCATTTTTAGAATGCCAAATCTGTCAAAGATTACTTTTTACCGTTGCATATTTCCCAAACTAGATGATAAATGGAGTTCCATGGTGTCTACAAGCCCAACAGATATCCAACTGGTAAAATGCAACTTGTCAGATGAATTTCTTCCAATAGTTGTCATGTGGTCTGCGAATGTAGAATTTTTAAACCTATCAGAAAACAATTTCACAATTCTTCCAGAATGCATCAAAGATTGTCGCTTTTTATGGTCTCTTAGGTTGGATGATTGCAAGTGCCTTAGAGAAATTAGAGGGATTCCACCAAATTTAAAACACTTGTCTGCAATACGCTGCAAATCATTGACTTCCTCGTGCAAAAACATGCTATTGAATCAGGAACTGCATGAGGCTGGAGGAACCAAATTTTGTTTTTCAGGATTTGCAAGGATTCCAGATTGGTTTGATCACCAAAGCATGGGACATACAATTTCTTTTTGGTTTCGTAACAAGCTCCCTTCCATGGCTCTCTGTTTTTCTACTAAATCAGCTGCTACAATGCCCACGGGAAAGACTAATTTTTATATCACAATACCCACTCTATTCATCAATGGCAATAAATATGATCGTCTAGATATGAGCGGTATAATGTCGACTCATCATACATATTTGTATGACATAAATCTGAGAAAACTTGATCAACATCCCTTCATGAAGGACTCCATACTTCTAGAAAATGAGTGGAATCATGCAGAGATTATATGTGAACATCAGGAGGTGGAACCAATAACAGAAATTGGAATCCATTTTTACAAAGAGCAAAATAACATGGATGATATTCAATTCACCAATCCTTATGAAAAGATAAAATTAAATGATGATGATGGTGATGATTTTTTTTATGACGTTGATGATGTTCTTGATGATGATAATAATGATGTCTTTTATGATGTTATTGATGTTCTTGATGATGATGATGATAAGGATGTTCTTGGTGATGAAGACGACCACCATTCACAATAG 3315 0.3677 MALQSFISSSSSSLSYGFTYDVFLSFRGSDTRYGFTGNLYKDLCKKGIRTFIDDRELPGGDKITPSLFKAIEESRIFIPVLSINYASSSFCLDELVHIIHCCKKNGRLVLPIFYDVEPSNVRHQIGSYGKALAEHIEKFQNSTDNMERLQKWKSALTQTANFSGHHFSSRNGYEYEFIEKIVKYLSSKINRVPLYVADYPVGLESRVLKVNKFLDVGSTGVVHMLGIYGTGGMGKTTLARAVYNSIADQFDCLCFLHDVRENSTKYGLEHLQEKLLSKLVELDIELGDINEGIPIIKKRLHRNKVLLILDDVHELKQLQVLAGGLDWFGPGSRVIVTTRDRHLLKSHGIERAYELPKLNETEALELLRWNSFKNNKVDSNFDGVLRCAVTYASGLPLALEVVGSNLFGNNIGEWKSALDRYRRIPIKKIQEILKVSFDALEKDEQNVFLDIACCFKGYNLKELEDILYAHYGNCMKYQISVLDEKSLIKINRYEGNYVVTLHFLIEKMGKEIVNEKSPNEPGRHSRLWFHKDIIDVLEENQGSSEIEIIYLEFPSSEEEVVDWEGDELKKMENLKTLIVKNGTFSNGPKYLPNSLRVLEWPKYPSPVIPSDFCPKKLSICKLQQSDFISFGFHGTMKRFGNVRELNLDDCQYLTRIHDVSNLPNLEIFSFQFCKNLIEIHESVGFLNKLQILNAVNCSKLRSFPAMKSASLRRLGLAYCTSLKTFPEILGEMKNITHISLMKTSIDKLPVSFQNLTGLQIFFIEGNVVQRLPSSIFRMPNLSKITFYRCIFPKLDDKWSSMVSTSPTDIQLVKCNLSDEFLPIVVMWSANVEFLNLSENNFTILPECIKDCRFLWSLRLDDCKCLREIRGIPPNLKHLSAIRCKSLTSSCKNMLLNQELHEAGGTKFCFSGFARIPDWFDHQSMGHTISFWFRNKLPSMALCFSTKSAATMPTGKTNFYITIPTLFINGNKYDRLDMSGIMSTHHTYLYDINLRKLDQHPFMKDSILLENEWNHAEIICEHQEVEPITEIGIHFYKEQNNMDDIQFTNPYEKIKLNDDDGDDFFYDVDDVLDDDNNDVFYDVIDVLDDDDDKDVLGDEDDHHSQ* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1963 1104 Gene3D - 357 441 IPR042197 -
Mtr6g1963 1104 Gene3D - 193 352 IPR027417 -
Mtr6g1963 1104 CDD AAA 223 340 - -
Mtr6g1963 1104 SUPERFAMILY L domain-like 560 908 - -
Mtr6g1963 1104 SMART AAA_5 221 358 IPR003593 -
Mtr6g1963 1104 PRINTS Disease resistance protein signature 224 239 - -
Mtr6g1963 1104 PRINTS Disease resistance protein signature 299 313 - -
Mtr6g1963 1104 PRINTS Disease resistance protein signature 392 406 - -
Mtr6g1963 1104 PRINTS Disease resistance protein signature 684 700 - -
Mtr6g1963 1104 Gene3D - 15 192 IPR035897 -
Mtr6g1963 1104 ProSiteProfiles TIR domain profile. 18 189 IPR000157 GO:0007165
Mtr6g1963 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 451 IPR027417 -
Mtr6g1963 1104 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 1019 IPR044974 GO:0006952
Mtr6g1963 1104 Gene3D Ribonuclease Inhibitor 541 706 IPR032675 -
Mtr6g1963 1104 SMART till_3 19 162 IPR000157 GO:0007165
Mtr6g1963 1104 SUPERFAMILY "Winged helix" DNA-binding domain 427 538 IPR036390 -
Mtr6g1963 1104 Pfam TIR domain 20 190 IPR000157 GO:0007165
Mtr6g1963 1104 Pfam NB-ARC domain 206 434 IPR002182 GO:0043531
Mtr6g1963 1104 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 164 IPR035897 -
Mtr6g1963 1104 Gene3D Ribonuclease Inhibitor 707 901 IPR032675 -
Mtr6g1963 1104 PANTHER ARCHAEAL ATPASE 30 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1963 Mtr-Chr6 35758791 35762552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1963 20 840 WRKY Transcription Factor Family AT4G12020 27.982 1.99e-67 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1963 - - mtr:MTR_6g075690 1555.04