Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1962 ATGGATGAACTGAAGCAACTGCAGGGTTTGGCTGGAGGGCTTGATTGGTTCAGTCCTGACAGCAGAGTCATCATTACCACTCGAGACAAACGTTTGCTAACATGCAGTCACAGGGTTGAAACAACCTATGAAGTGGATTGGTTAAATGTGGCAGAAGCTCTTGAATTATTGACGTGGAAGGCATTTAAAAGTAACAGAGTCCATTCAAGTTACAAGTACATTCTACCATGTGCAATAACTTATGCTTCTGGCCTACCATTAGCTTTAGAAGTAGTTGGTTCCAACTTGTTTGGATTAGATATAGGAGAATGGGAATCCACATTAGACCAGTATGAAAGGATTCCAAATAAAGAGATCCAAAAGATACTTAAAGTTTTGATGCTTTGGAGAAAGATGAGCAAAGTGTTTTTCTCGACATTGCTTGTTGCTTGA 432 0.3981 MDELKQLQGLAGGLDWFSPDSRVIITTRDKRLLTCSHRVETTYEVDWLNVAEALELLTWKAFKSNRVHSSYKYILPCAITYASGLPLALEVVGSNLFGLDIGEWESTLDQYERIPNKEIQKILKVLMLWRKMSKVFFSTLLVA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1962 143 Gene3D - 48 127 IPR042197 -
Mtr6g1962 143 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 125 IPR044974 GO:0006952
Mtr6g1962 143 Pfam NB-ARC domain 20 115 IPR002182 GO:0043531
Mtr6g1962 143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 125 IPR027417 -
Mtr6g1962 143 PANTHER ARCHAEAL ATPASE 3 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1962 Mtr-Chr6 35756436 35757105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1962 7 98 WRKY Transcription Factor Family AT5G45050 38.043 4.69e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1962 - - mtr:MTR_6g075960 228.794