Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1960 ATGGCTATGCTTCAATCATCCGTCTCCTCATCCTCTTCCTTCTCCTATGGATTCACCTATGACGTGTTCCTTAGCTTTAGAGGTAGTGACACTCGTTATCGTTTTACTGGAAATCTCAATAGAGCTCTTTGTGACAAGGGAATCCGAACCTTCATGGATGACAGAGAGCTTCAAGGAGGTGAAGAAATAACATCATCACTTTTCAAGGCCATTGAAGAGTCTAGGATTTTCATTCCCGTCTTGTCTATCAATTATGCTTCTTCTTCATTTTGCTTGGACGAACTTGTCCACATCATTAACTGCTTCAAGGAAAGCGGGCGTCTAGTTTTGCCAATTTTCTATGATGTGGAACCTTCTCACGTGCGACATCACACGGGCAGTTATGGTAAAGCACTGGATGATCATATAAAGAAGTTCCAAAATAACAAGGATAGCATGGAGAGGTTGCAGAAATGGAAGAGTGCTCTTACTCAAACTGCTAACTTCTCTGGCCACCATTTCAATCCTGGGAATGGCTATGAACACGAGTTTATTGAGAAGATAGTCAAATATGTATCTAACAAGATCAATCATGTTCCTTTATATGTTGCTGATTTCCCTGTTGGTATCGAGTCTAGGGTTCTAAAAGTAAATTCACTTATGGATTTTGGATCTAATGGTGAAGTTCAGATGCTAGGGATCTATGGGCCTGGAGGAATGGGAAAGACGACACTTGCAAGAGCAGTTTATAATTCCCTAGCTGATCAATTTGATGATTTGTGTTTTCTTCACGATGTAAGGGGAAATTCAGCTAAATATGGTTTGGAGCATCTGCAGGGAAAGCTCCTTTCTAAATTAGTCAAACTGGACATTAAGTTAGGAGATGTCTACGAGGGAATTCCAATCATAGAGAAAAGGCTTCACCAAAAGAAGGTTTTGTTGATTCTCGATGATGTTCACGAACTAAAGCAGTTGGAAGTTTTGGCTGGAGGATTTCGTTGGTTTGGTCCTGGTAGTATTGTGATCATTACCACTCGAGACAAACAATTGCTAGCTCATCATGGGATTGAAAGAGCATATAAATTACATAAGTTAAATGAGAAAGAAGCTCTTGAATTGTTGACGTGGAAGGCTTTAAAAAATAACAAAGTTGATACAAATTTCGACAGCGTTTTACACCATGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTAGAAGTAGTGGGTTCCAACTTGTTTGGAAAGAATATAGGAGAATGGAAATCTGCATTAAATCAGTATGAAAGGATTCCCGATAAAAAGATCCAAGAGATACTCAAAGTAAGCTTTGATGCTTTGGGGGAAGCAGAACAAAATGTTTTTCTCGACATCGCTTGCTGCTTCAAAGGATATGAATTGAAAGAACTTGAAGATGTACTTCATGCTCATTATGGTAACTGCATGAAATATCAAATCAGAGTGTTGCTCGATAAATCTCTCCTAAATATCAAGCAGTGCCAATGGAGTCTTACTGATGTTGTGACGTTACATGCCTTGATAGAGAAAATGGGTAAAGAAATTGTCCGGAAAGAGTCTCCAAAAGAGCCTGGAAGACGTAGTAGGTTGTGGTTCCATAAAGACATAATTGATGTCTTAGAAGCAAATAAGGGATCAAGTGAAATTGAAATTATATATTTGGAATGCTCGTCATCTGAGAAAGTGGTAGTAGATTGGAAGGGAGATGAACTGGAGAAGATGCAAAAGCTCAAAACACTTATTGTTAAGAATGGTACCTTTTCCAATGGTCCAAAATATCTTCCAAACAGTTTGAGAGTATTGGAATGGCAAAAATATCCTTCACGGGTCATACCATCTGATTTTTTCCCAAAGAAACTTTCTATATGCAAACTACAGCAAAGTGACTTTACATCATTTGAGTTGCGTGGCACAATGAAGAGGTTTGTGAATATGAGAGAGTTAAATCTAGACAATTGTCAATTTTTAACACGGATACATGACGTCTCCAACCTCTCAAATTTAGAAATATTTTCATTTCAACAGTGTAAGAATTTAATTGAAATTCACAAATCTGTTGGGTTCCTAAATAAACTTGAAGTCTTGAACGCTGAAGGTTGCAGCAAGCTTATGAGTTTTCCACCTCTGAAGTTGACCTCTCTTGACGAACTAAGGCTTTCAGATTGTAAGAATCTTAACAATTTTCCAGAAATATTAGGAGAGATGAATAATATAAAAAGAATTTGTTGGGAAAACACTTCCATTAAAGAAGTGCCAGTTTCATTTCAAAATCTCACGAAGCTTCTTTACTTAACTATAAAAGGAAAAGGAATGGTTAGGTTGCCAAGTAGCATTTTTAGGATGCCAAATCTGTCAGACATTACAGCTGAAGGTTGCATATTTCCCAAACTGGATGATAAATTGAGTTCCATGCTGACTACAAGCCCCAATCGCCTATGGTGTATTACACTGAAAAGTTGCAACTTGTCAGATGAATTTCTTCCAATATTTGTCATGTGGTCTGCTTACGTGAGAATCTTAGACCTATCAGGAAATAATTTCACAATTCTTCCAGAATGCATCAAAGATTGTCACCTTTTATCGGATCTTATATTGGATGATTGCAAGTGCCTTAGAGAAATTAGAGGGATTCCACTAAATTTAACAAACTTGTCTGCAGCAAACTGCAAATCATTGACTTCCTCGTGTAGAAACATGCTATTGAATCAGGAACTGCATGAGGCTGGAGGAACCATATTTTGTTTTTCAGGATTTGTGAGGATTCCAGAGTGGTTTGATCATCAAAACATGGGACATACAATTTCTTTTTGGTTTCGTAACAAGCTCCCTTCCATGGCTCTCTGTTTTTCTACTAAATCAGTTGCTAAAGGTTTTCATATGAGTACGAAAAGACCCATACTTGTCATCGATGGCAACAATTATAGTCTATCTTCCTTTCATGGGTATGATATAATGTTGACTCATCATACATATTTGTATGCAACGGAACTGAAATCTCGTCCAGTCAACAACTTGAACAAAATAATTTTAAAAAATGAATGGAATCATGCAGAGGTTATATTTGAACATTCAAATGTGGAACCACTAACAGAAATTGGAATCCATTTTTTCAAACACGAAAATAACATGGATGACATTCAATTCACCAATCCTTAA 3153 0.3739 MAMLQSSVSSSSSFSYGFTYDVFLSFRGSDTRYRFTGNLNRALCDKGIRTFMDDRELQGGEEITSSLFKAIEESRIFIPVLSINYASSSFCLDELVHIINCFKESGRLVLPIFYDVEPSHVRHHTGSYGKALDDHIKKFQNNKDSMERLQKWKSALTQTANFSGHHFNPGNGYEHEFIEKIVKYVSNKINHVPLYVADFPVGIESRVLKVNSLMDFGSNGEVQMLGIYGPGGMGKTTLARAVYNSLADQFDDLCFLHDVRGNSAKYGLEHLQGKLLSKLVKLDIKLGDVYEGIPIIEKRLHQKKVLLILDDVHELKQLEVLAGGFRWFGPGSIVIITTRDKQLLAHHGIERAYKLHKLNEKEALELLTWKALKNNKVDTNFDSVLHHAVTYASGLPLALEVVGSNLFGKNIGEWKSALNQYERIPDKKIQEILKVSFDALGEAEQNVFLDIACCFKGYELKELEDVLHAHYGNCMKYQIRVLLDKSLLNIKQCQWSLTDVVTLHALIEKMGKEIVRKESPKEPGRRSRLWFHKDIIDVLEANKGSSEIEIIYLECSSSEKVVVDWKGDELEKMQKLKTLIVKNGTFSNGPKYLPNSLRVLEWQKYPSRVIPSDFFPKKLSICKLQQSDFTSFELRGTMKRFVNMRELNLDNCQFLTRIHDVSNLSNLEIFSFQQCKNLIEIHKSVGFLNKLEVLNAEGCSKLMSFPPLKLTSLDELRLSDCKNLNNFPEILGEMNNIKRICWENTSIKEVPVSFQNLTKLLYLTIKGKGMVRLPSSIFRMPNLSDITAEGCIFPKLDDKLSSMLTTSPNRLWCITLKSCNLSDEFLPIFVMWSAYVRILDLSGNNFTILPECIKDCHLLSDLILDDCKCLREIRGIPLNLTNLSAANCKSLTSSCRNMLLNQELHEAGGTIFCFSGFVRIPEWFDHQNMGHTISFWFRNKLPSMALCFSTKSVAKGFHMSTKRPILVIDGNNYSLSSFHGYDIMLTHHTYLYATELKSRPVNNLNKIILKNEWNHAEVIFEHSNVEPLTEIGIHFFKHENNMDDIQFTNP* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1960 1050 Gene3D Ribonuclease Inhibitor 724 907 IPR032675 -
Mtr6g1960 1050 Pfam TIR domain 20 193 IPR000157 GO:0007165
Mtr6g1960 1050 Gene3D - 192 352 IPR027417 -
Mtr6g1960 1050 PRINTS Disease resistance protein signature 224 239 - -
Mtr6g1960 1050 PRINTS Disease resistance protein signature 299 313 - -
Mtr6g1960 1050 PRINTS Disease resistance protein signature 392 406 - -
Mtr6g1960 1050 PRINTS Disease resistance protein signature 708 724 - -
Mtr6g1960 1050 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 164 IPR035897 -
Mtr6g1960 1050 PANTHER ARCHAEAL ATPASE 30 1021 - -
Mtr6g1960 1050 Gene3D - 357 441 IPR042197 -
Mtr6g1960 1050 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 1021 IPR044974 GO:0006952
Mtr6g1960 1050 SMART till_3 19 162 IPR000157 GO:0007165
Mtr6g1960 1050 CDD AAA 227 340 - -
Mtr6g1960 1050 Gene3D - 15 191 IPR035897 -
Mtr6g1960 1050 ProSiteProfiles TIR domain profile. 18 189 IPR000157 GO:0007165
Mtr6g1960 1050 Pfam NB-ARC domain 218 434 IPR002182 GO:0043531
Mtr6g1960 1050 SMART AAA_5 221 368 IPR003593 -
Mtr6g1960 1050 SUPERFAMILY L domain-like 517 924 - -
Mtr6g1960 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 451 IPR027417 -
Mtr6g1960 1050 Gene3D Ribonuclease Inhibitor 539 723 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1960 Mtr-Chr6 35701206 35756345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1960 14 921 WRKY Transcription Factor Family AT4G12020 27.292 5.17e-72 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1960 - - mtr:MTR_6g075690 1499.57